View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10539_high_24 (Length: 286)
Name: NF10539_high_24
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 47502791 - 47502515
Alignment:
| Q |
1 |
aagattgctgcccacccctgcacaactcctattcaaccatgacaaatgttaattgcaactcgccatttaatgaatgta--------acacnnnnnnnnnn |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47502791 |
aagattgctgcccacccctgcacaactcctattcaaccatgacaaatgttaattgcaactcgccatttaatgaatgtaattatgtaacactttttttttt |
47502692 |
T |
|
| Q |
93 |
nnnnccaatgatgttataagattgaaggtgatcataat---ctttcaactacataaatttaaacagctaaaaccatggttaatcatctccaaattcaaga |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47502691 |
ctt-ccaatgatgttataagattgaaggtgatcataataatctttcaactacataaatttaaacagctaaaaccatggttaatcatctccaaattcaaga |
47502593 |
T |
|
| Q |
190 |
ttaatgaagttcaacttaaagaattgttgtgaccgtgaatgtgcaaaaaattgtgtactatatttgtattgattagtg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47502592 |
ttaatgaagttcaacttaaagaattgttgtgaccgtgaatgtgcaaaaaattgtgtactatatttgtattgattagtg |
47502515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University