View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_high_6 (Length: 438)
Name: NF10539_high_6
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 4718158 - 4717809
Alignment:
| Q |
16 |
aaaatcagctccatagagaaaagcataatcattgacatctagaactgaaacaggactaagattttccatgctatgttctgtctgaatcttctttggtgac |
115 |
Q |
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| T |
4718158 |
aaaatcagctccatagagaaaagcataatcattgacatctagaactgaaacaggactaagattttccatgctatgttctgtctgaatcttctttggtgac |
4718059 |
T |
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| Q |
116 |
acatgttttttcaccttgttcctcatttttggttcaacaaaccctttcttttgcctattaggcaatgaagaagttgaacatgaacttgaacttgaaccag |
215 |
Q |
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| T |
4718058 |
acatgttttttcaccttgttcctcatttttggttcaacaaaccctttcttttgtctattaggcaatgaagaagttgaacatgaacttgaacttgaaccag |
4717959 |
T |
|
| Q |
216 |
catcaccaccatatccataataactacaattacaccttgtagaaacacttgaaaaatctttatctttactataatctctaacccttgatttatacttaga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4717958 |
catcaccaccatatccataataactacaattacaccttgtagaaacacttgaaaaatctttatctttactacaatctctaacccttgatttatacttaga |
4717859 |
T |
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| Q |
316 |
agaagatgaagaaaatggaacccttcttggttcatcttttaacttagaaa |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4717858 |
agaagatgaagaaaatggaacccttcttggttcatcttttaacttagaaa |
4717809 |
T |
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