View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_high_9 (Length: 373)
Name: NF10539_high_9
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 30224994 - 30225351
Alignment:
| Q |
1 |
agaaaaaatcaaaatcaaaggtcgtatccacttctcaggtgagctttggtgaagataaaggtgttcgccctagacgaccaatgaagaacataaccttgag |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
30224994 |
agaacaaatcaaaatcaaaggtcgtatccacttctcaagtgagctttggtgaagataaaggtgttcgtcccagacgaccaatgaagaacataaccttgag |
30225093 |
T |
|
| Q |
101 |
ttattaggaatataaatagattggttagttaaaaagattagggttacacttacactagcttgataaagtgtagtgggcaagaagaaataatatttgaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30225094 |
ttattaggaatataaatagattggttagttaaaaagattagggttacacttacactagcttgataaagtgcagtgggcaagaagaaataatatttgaact |
30225193 |
T |
|
| Q |
201 |
atcgtaagccagacagggttataacagctaataatataaaatcatggtgaatag-nnnnnnnnntgcagtgcaagaaaataacaataatataaatacaaa |
299 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30225194 |
atcgtaagccagacaggattataacagctaataatataaaatcatggtgaatagaaaaaaaaaatgcagtgcaagaaaataacaataatataaatacaaa |
30225293 |
T |
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| Q |
300 |
gtatgtataagaaaatctatgtttcagatcagaccatgcatatttcctaaagaaaact |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30225294 |
gtatgtataagaaaatctatgtttcagatcagaccatgcatatttcctaaagaaaact |
30225351 |
T |
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