View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_1 (Length: 478)

Name: NF10539_low_1
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_1
NF10539_low_1
[»] chr2 (26 HSPs)
chr2 (177-459)||(2412935-2413209)
chr2 (4-170)||(45418566-45418732)
chr2 (4-170)||(8147334-8147501)
chr2 (4-170)||(44084621-44084787)
chr2 (5-170)||(770977-771147)
chr2 (4-134)||(12756855-12756985)
chr2 (1-170)||(8059348-8059517)
chr2 (4-150)||(41251652-41251798)
chr2 (4-153)||(35962715-35962864)
chr2 (4-153)||(42439986-42440135)
chr2 (4-147)||(18981622-18981765)
chr2 (16-153)||(2958131-2958267)
chr2 (174-307)||(31758331-31758463)
chr2 (4-153)||(17445059-17445206)
chr2 (4-153)||(31581640-31581789)
chr2 (4-153)||(32127159-32127308)
chr2 (4-152)||(6403822-6403970)
chr2 (4-150)||(16405603-16405749)
chr2 (20-134)||(26162733-26162847)
chr2 (4-128)||(2285887-2286011)
chr2 (53-157)||(26237953-26238056)
chr2 (186-307)||(40200005-40200125)
chr2 (37-161)||(4555260-4555385)
chr2 (74-133)||(34905969-34906028)
chr2 (63-140)||(7072627-7072706)
chr2 (98-170)||(34523223-34523295)
[»] chr7 (27 HSPs)
chr7 (5-173)||(34389075-34389243)
chr7 (4-170)||(37002162-37002328)
chr7 (4-164)||(8867749-8867909)
chr7 (4-170)||(26624728-26624895)
chr7 (4-140)||(35090181-35090317)
chr7 (4-170)||(7002708-7002874)
chr7 (4-170)||(7048579-7048745)
chr7 (4-170)||(33685547-33685713)
chr7 (4-153)||(5555487-5555636)
chr7 (4-137)||(38638254-38638387)
chr7 (4-137)||(40920021-40920154)
chr7 (4-150)||(3114114-3114260)
chr7 (4-170)||(43184486-43184652)
chr7 (4-152)||(14777125-14777273)
chr7 (4-134)||(36658200-36658330)
chr7 (4-153)||(8394125-8394274)
chr7 (4-153)||(36630816-36630965)
chr7 (181-307)||(27954606-27954731)
chr7 (186-307)||(27951369-27951489)
chr7 (174-307)||(29864468-29864600)
chr7 (176-266)||(28958459-28958548)
chr7 (108-156)||(10876829-10876877)
chr7 (174-297)||(20403620-20403742)
chr7 (117-169)||(37966614-37966666)
chr7 (38-94)||(10868525-10868583)
chr7 (63-153)||(26502810-26502899)
chr7 (63-153)||(26589815-26589904)
[»] chr5 (22 HSPs)
chr5 (4-170)||(31680350-31680516)
chr5 (4-170)||(12278878-12279044)
chr5 (4-170)||(17332569-17332735)
chr5 (5-173)||(37254621-37254789)
chr5 (4-170)||(31501734-31501900)
chr5 (4-139)||(33430335-33430470)
chr5 (4-153)||(10033927-10034076)
chr5 (4-153)||(13817977-13818126)
chr5 (4-153)||(36293639-36293788)
chr5 (4-153)||(39434696-39434845)
chr5 (4-153)||(39657524-39657673)
chr5 (4-136)||(43068894-43069026)
chr5 (4-134)||(16155016-16155146)
chr5 (4-170)||(36291354-36291520)
chr5 (4-151)||(1776394-1776541)
chr5 (4-123)||(16333894-16334013)
chr5 (4-151)||(19985941-19986088)
chr5 (4-152)||(26283336-26283484)
chr5 (58-142)||(28801298-28801382)
chr5 (4-153)||(3155649-3155798)
chr5 (68-170)||(202622-202724)
chr5 (98-170)||(26543877-26543949)
[»] chr3 (20 HSPs)
chr3 (4-170)||(45182964-45183130)
chr3 (1-173)||(11018227-11018399)
chr3 (1-173)||(6503584-6503756)
chr3 (4-170)||(6930912-6931078)
chr3 (4-170)||(33040936-33041102)
chr3 (4-152)||(22968462-22968610)
chr3 (4-170)||(19565519-19565685)
chr3 (7-173)||(27935158-27935324)
chr3 (4-152)||(6269444-6269592)
chr3 (4-153)||(19390146-19390295)
chr3 (4-170)||(45335858-45336023)
chr3 (4-153)||(34084140-34084289)
chr3 (11-152)||(39771791-39771932)
chr3 (4-164)||(35514255-35514411)
chr3 (28-140)||(40081782-40081893)
chr3 (58-137)||(5135285-5135364)
chr3 (174-307)||(25805039-25805172)
chr3 (116-170)||(6890981-6891035)
chr3 (104-164)||(5354698-5354758)
chr3 (105-153)||(22922157-22922205)
[»] chr4 (43 HSPs)
chr4 (1-173)||(43143599-43143771)
chr4 (4-163)||(30216760-30216919)
chr4 (4-170)||(3292914-3293080)
chr4 (4-170)||(6690253-6690419)
chr4 (1-173)||(42333791-42333963)
chr4 (4-170)||(50205095-50205261)
chr4 (4-170)||(10352902-10353068)
chr4 (4-164)||(48989317-48989477)
chr4 (4-150)||(29319723-29319869)
chr4 (4-134)||(44156670-44156800)
chr4 (4-152)||(20129311-20129459)
chr4 (4-170)||(26448036-26448201)
chr4 (4-153)||(25930708-25930857)
chr4 (4-170)||(28877268-28877434)
chr4 (4-129)||(35545977-35546102)
chr4 (4-170)||(29996001-29996167)
chr4 (11-152)||(26439304-26439445)
chr4 (58-167)||(30109942-30110051)
chr4 (11-152)||(34407309-34407450)
chr4 (174-307)||(9417409-9417541)
chr4 (4-153)||(36382364-36382512)
chr4 (4-152)||(13012189-13012337)
chr4 (4-140)||(40529028-40529164)
chr4 (4-152)||(47500774-47500922)
chr4 (4-118)||(1817752-1817866)
chr4 (4-170)||(30077649-30077814)
chr4 (58-173)||(48129950-48130061)
chr4 (5-129)||(17511252-17511377)
chr4 (11-152)||(43355905-43356046)
chr4 (4-75)||(13392899-13392970)
chr4 (4-75)||(13396038-13396109)
chr4 (4-96)||(6235577-6235669)
chr4 (60-128)||(6254569-6254637)
chr4 (68-153)||(27363361-27363446)
chr4 (63-164)||(45194165-45194266)
chr4 (116-170)||(49908782-49908836)
chr4 (112-173)||(7769308-7769369)
chr4 (116-170)||(5517494-5517548)
chr4 (117-170)||(17554979-17555032)
chr4 (117-170)||(6212029-6212082)
chr4 (105-170)||(13392989-13393054)
chr4 (105-170)||(13396128-13396193)
chr4 (116-169)||(50720476-50720529)
[»] chr8 (16 HSPs)
chr8 (1-173)||(4403988-4404160)
chr8 (4-170)||(23402091-23402257)
chr8 (1-173)||(34136840-34137012)
chr8 (4-157)||(16788043-16788196)
chr8 (4-131)||(9877242-9877369)
chr8 (174-307)||(21692224-21692356)
chr8 (4-164)||(36408540-36408700)
chr8 (4-170)||(2729214-2729380)
chr8 (4-153)||(29728404-29728553)
chr8 (4-139)||(3648812-3648947)
chr8 (4-153)||(15838286-15838434)
chr8 (4-152)||(39914516-39914663)
chr8 (39-134)||(3435288-3435385)
chr8 (4-121)||(42230971-42231086)
chr8 (60-130)||(40470567-40470637)
chr8 (68-161)||(10397122-10397215)
[»] chr6 (14 HSPs)
chr6 (4-170)||(28996713-28996879)
chr6 (4-153)||(18339106-18339255)
chr6 (4-170)||(29743266-29743432)
chr6 (4-153)||(34948776-34948925)
chr6 (174-307)||(14354885-14355017)
chr6 (4-153)||(13837821-13837970)
chr6 (4-152)||(398618-398766)
chr6 (4-134)||(33229354-33229484)
chr6 (68-169)||(24697899-24698000)
chr6 (58-164)||(31028436-31028542)
chr6 (117-170)||(13647000-13647053)
chr6 (117-170)||(34385519-34385572)
chr6 (76-125)||(24072576-24072625)
chr6 (68-125)||(24695515-24695572)
[»] scaffold0502 (1 HSPs)
scaffold0502 (4-153)||(5230-5379)
[»] chr1 (16 HSPs)
chr1 (5-173)||(35907532-35907700)
chr1 (5-170)||(17445296-17445461)
chr1 (5-170)||(321396-321561)
chr1 (4-149)||(7433449-7433594)
chr1 (6-153)||(32982076-32982223)
chr1 (4-170)||(3828967-3829132)
chr1 (4-152)||(26144256-26144404)
chr1 (9-134)||(42310964-42311089)
chr1 (27-170)||(33489670-33489815)
chr1 (27-170)||(41972314-41972458)
chr1 (393-459)||(41507887-41507953)
chr1 (68-138)||(35951427-35951497)
chr1 (117-180)||(44352614-44352677)
chr1 (116-170)||(31866960-31867014)
chr1 (88-170)||(48901207-48901288)
chr1 (50-134)||(23313257-23313342)
[»] scaffold0041 (1 HSPs)
scaffold0041 (4-137)||(52941-53074)
[»] scaffold0154 (1 HSPs)
scaffold0154 (4-170)||(31463-31629)
[»] scaffold0069 (1 HSPs)
scaffold0069 (4-153)||(17842-17991)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-152)||(480475-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (4-152)||(523-671)
[»] scaffold0018 (1 HSPs)
scaffold0018 (393-459)||(159349-159414)
[»] scaffold0769 (1 HSPs)
scaffold0769 (98-170)||(1260-1332)
[»] scaffold0012 (1 HSPs)
scaffold0012 (98-160)||(194021-194083)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 177 - 459
Target Start/End: Original strand, 2412935 - 2413209
Alignment:
Q  177 tgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatacttaatc 276  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| || |||||||| ||| |||    
T  2412935 tgaatcttgtcatgaatcttcgttttttcttccattttt-gcaaggctattataaaagtaagtagctaaatatatcctttagggttagagatgcttgatc 2413033  T
Q  277 aaattaatatctactctttttgatacttaaaaattaaatatagaatcatatagaatacacacaaactaatgatgtgagagataccggattgagccaagtt 376  Q
    || |||||||  ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2413034 aagttaatatgaactctttttgatacttaa-------atatagaatcatatagaatacacacaaactaatgatgtgagagataccggattgagccaagtt 2413126  T
Q  377 ataaacattattagttatgcttttgtcaaaacatcaactgtttaagagttatgatgtgagagataccggcccttggtttttgt 459  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2413127 ataaacattattagttatgcttttgtctaaacatcaactgtttaagagttatgatgtgagagataccggccattggtttttgt 2413209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 45418732 - 45418566
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||| ||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |    
T  45418732 gtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttggat 45418633  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  45418632 ctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45418566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 8147501 - 8147334
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaattttt-agattgctcaaatttttctttttgtaagtgtgttaattggcttttggattggg 102  Q
    ||||| ||||| ||||||||||| |||||||  ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||  |||||    
T  8147501 gtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgagttggg 8147402  T
Q  103 tctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  8147401 tctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 8147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 44084621 - 44084787
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||| ||||||||||||  | |||||||||| ||||||| |||||||||||||||||||||||||||||   ||||||||||||||    
T  44084621 gtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttggattgggt 44084720  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
     |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||    
T  44084721 ttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgccc 44084787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 771147 - 770977
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtc 104  Q
    |||||||||| || ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||    
T  771147 tgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggctttttggttgggtc 771048  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccgg-----ggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||| ||||||||||||||||| ||||| |||||     |||||||||||||||||| |||||    
T  771047 taatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgccc 770977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 12756855 - 12756985
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12756855 gtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 12756954  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||| |||||||||||||||||| |||||    
T  12756955 ctaatgcgcaaaaattatcgatcgaacccgg 12756985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 8059348 - 8059517
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattg 100  Q
    |||||||||||||| ||||||||||||| |||||  |||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||| |||    
T  8059348 attgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattggcttttgggttg 8059447  T
Q  101 ggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
      ||||||||||||||||||||||| ||||| || ||| |  ||||||||| |||||||||||| |||||    
T  8059448 actctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccc 8059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 41251652 - 41251798
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  41251652 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 41251751  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtc 150  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  41251752 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 35962864 - 35962715
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| |||| |||||||||||||| |||||||||  |||||||| ||| ||    
T  35962864 gtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataagcttttgggttgagt 35962765  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  35962764 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgcc 35962715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 42440135 - 42439986
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| | |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||  ||    
T  42440135 gtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggtttagt 42440036  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  42440035 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 42439986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 18981765 - 18981622
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||||| ||||| ||||||||||||||||||| ||| ||||| | ||||||| ||| ||    
T  18981765 gtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatggacttttgggttgagt 18981666  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggg 147  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  18981665 ctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg 18981622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 2958131 - 2958267
Alignment:
Q  16 aaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaa 115  Q
    ||||||| |||||||||||  ||||| |||||| ||||| | ||||||||||| ||||||| ||||||||| ||||||||| ||| ||||||||||| ||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgc-aa 2958229  T
Q  116 aattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2958230 aattatcgatcgagcccggacgaccgcccggggtcgcc 2958267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 31758331 - 31758463
Alignment:
Q  174 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 273  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||| ||| ||||||| ||| ||||| ||||||||||| ||||||||||||     
T  31758331 tcatgaatcttgtcatgaatcttcatcttttcttccatttt-tgcaaggctactatgaaagtaaatagctaaatctatcctttggggttagagatacttg 31758429  T
Q  274 atcaaattaatatctactctttttgatacttaaa 307  Q
    ||||| ||||||| |||||||||| |||||||||    
T  31758430 atcaagttaatatgtactcttttttatacttaaa 31758463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 17445059 - 17445206
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  17445059 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 17445158  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||  |||||||||||||||||||||| ||| ||||| |||| |||||||    
T  17445159 cta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgcc 17445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 31581640 - 31581789
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||  || ||    
T  31581640 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggatgagt 31581739  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||| |||||||| ||||| ||||||| || ||||| |||| |||||||    
T  31581740 ctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgcc 31581789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 32127159 - 32127308
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||| |||||||  ||||| |||||| |||||||  |||||||||||||||||| |||||||||  |||||||| | | ||    
T  32127159 gtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatgagcttttgggtcgagt 32127258  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
     ||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  32127259 ttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 6403822 - 6403970
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| |||||||||   ||||| | ||| ||    
T  6403822 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttggttgagt 6403921  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  6403922 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 16405749 - 16405603
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||| ||||||  ||||| |||||| ||||||  ||||||||||||||| ||| |||||||||  |||||||| ||| ||    
T  16405749 gtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatgagcttttgggttgagt 16405650  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtc 150  Q
    |||| ||||||||||||||||| |||||||| ||||| ||| |||||    
T  16405649 ctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 26162733 - 26162847
Alignment:
Q  20 tccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaatt 119  Q
    |||||||||||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| |||  | ||||||| |||||||    
T  26162733 tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgaatttaatgtgtaaaaatt 26162832  T
Q  120 atcgatcgagcccgg 134  Q
    |||||  ||||||||    
T  26162833 atcgaaggagcccgg 26162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 2286011 - 2285887
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| | |||||||||  ||||| |||||| |||||||||||||||||| ||| |||| ||||||||| | ||||| | |||| |    
T  2286011 gtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatagactttttggttggat 2285912  T
Q  104 ctaatgtgcaaaaattatcgatcga 128  Q
     ||||||||||||||||||||||||    
T  2285911 ttaatgtgcaaaaattatcgatcga 2285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 26238056 - 26237953
Alignment:
Q  53 ttgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| |||  |||||| |||||||| |||||||||||||||| ||||| |||||||||||    
T  26238056 ttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaa-tatcgatcgagcccgggcgaccgcccggggtcgc 26237958  T
Q  153 cgggc 157  Q
    |||||    
T  26237957 cgggc 26237953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 186 - 307
Target Start/End: Original strand, 40200005 - 40200125
Alignment:
Q  186 tcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatacttaatcaaattaata 285  Q
    ||||||||||| || ||||||||||||||  ||||||||| |||  || ||| ||| ||||| ||||||||||| |||||||||||| ||||| ||| ||    
T  40200005 tcatgaatcttcatattttcttccattttc-gcaaggctactatgtaaataagtagctaaatctatcctttggggttagagatacttgatcaagttagta 40200103  T
Q  286 tctactctttttgatacttaaa 307  Q
    | ||||||||||||||||||||    
T  40200104 tgtactctttttgatacttaaa 40200125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 4555260 - 4555385
Alignment:
Q  37 tgtgagaatttttagatt--gctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||||||||| |||||  || |||| |||||||||||||||||||||||   |||||||| |||||| | ||||||||||||||||||||||| || |    
T  4555260 tgtgagaattttcagattttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgagtccag 4555359  T
Q  135 acgaccacccggggtcgccgggcggtg 161  Q
     ||||| |||| | |||||||||||||    
T  4555360 -cgaccgcccgagatcgccgggcggtg 4555385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 34906028 - 34905969
Alignment:
Q  74 taagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccg 133  Q
    ||||||||||||| ||||||||| || ||  |||||||||||||||||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 7072627 - 7072706
Alignment:
Q  63 ttttctttttgtaagtgtgt--taattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgacc 140  Q
    |||||||||| |||||||||  |||| ||||||||| ||| || ||||||  |||||||||||||||||||||| |||||    
T  7072627 ttttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgacc 7072706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 34523295 - 34523223
Alignment:
Q  98 ttgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||| ||||||||   ||||||  |||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  34523295 ttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 34523223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 6e-69; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 34389075 - 34389243
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtc 104  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||    
T  34389075 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtc 34389174  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  34389175 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgcccatg 34389243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 37002162 - 37002328
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  37002162 gtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggattgggt 37002261  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||    
T  37002262 ctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgccc 37002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 8867749 - 8867909
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  ||||| ||||||  |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  8867749 gtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaattggcttttggattgggt 8867848  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 164  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  8867849 ctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaa 8867909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 26624895 - 26624728
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  26624895 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattaacttttggattgggt 26624796  T
Q  104 ctaatgtgcaaaaattatcg-atcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||| |||||||||||||| ||||||||| | ||||| |||||||| |||||||||||||| |||||    
T  26624795 ctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgccc 26624728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 35090317 - 35090181
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||    
T  35090317 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 35090218  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgacc 140  Q
    |||||||||||||||||| |||||||||||| |||||    
T  35090217 ctaatgtgcaaaaattattgatcgagcccgggcgacc 35090181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 7002874 - 7002708
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||| ||||||||||  |||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||| ||||||    
T  7002874 gtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttgggttgggt 7002775  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
     ||||||  ||||||  |||||||||||||| ||||| | ||||||||||||||||||||| |||||    
T  7002774 gtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 7048745 - 7048579
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||| ||||||||||  |||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||| ||||||    
T  7048745 gtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttgggttgggt 7048646  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
     ||||||  ||||||  |||||||||||||| ||||| | ||||||||||||||||||||| |||||    
T  7048645 gtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 33685713 - 33685547
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||  ||||| ||||||  | |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||    
T  33685713 gtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggt 33685614  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
     |||||||||||||||||||||||||||||  ||||  || |||||||||||||||||||| |||||    
T  33685613 ttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgccc 33685547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 5555636 - 5555487
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| || |||||| ||||||||| ||| ||    
T  5555636 gtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgggcttttgggttgagt 5555537  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  5555536 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 5555487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 38638254 - 38638387
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |    
T  38638254 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggat 38638353  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacg 137  Q
    ||||||||||||||||||| ||||||| ||||||    
T  38638354 ctaatgtgcaaaaattatcaatcgagctcggacg 38638387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 40920021 - 40920154
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||| ||   |    
T  40920021 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttgggttaaat 40920120  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacg 137  Q
    ||||||||||||||||||||||||||||||||||    
T  40920121 ctaatgtgcaaaaattatcgatcgagcccggacg 40920154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 3114114 - 3114260
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  3114114 gtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 3114213  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtc 150  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||    
T  3114214 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 43184486 - 43184652
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||| ||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||  ||    
T  43184486 gtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttaagt 43184585  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    || ||| | |||||||||||||||||||||  ||||| |||||  |||||||||||||||| |||||    
T  43184586 ctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgccc 43184652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 14777125 - 14777273
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| |||||||||  |||||||| ||| ||    
T  14777125 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagt 14777224  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  14777225 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 36658330 - 36658200
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||| ||||||| ||| ||||||||||||||| | ||||||    
T  36658330 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgttaattggcttttcggttgggt 36658231  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    | |||||||||||||||||||||||| ||||    
T  36658230 ccaatgtgcaaaaattatcgatcgagtccgg 36658200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 8394274 - 8394125
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| |||||||||| |||||||| ||||||||| | ||||| | ||| ||    
T  8394274 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgagt 8394175  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
     |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  8394174 ttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 36630965 - 36630816
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||| | ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| | ||||| | ||| ||    
T  36630965 gtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgagt 36630866  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
     |||||||||||||||||||||||||||||| |||||  |||||||||||    
T  36630865 ttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 27954731 - 27954606
Alignment:
Q  181 tcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatacttaatcaaat 280  Q
    |||||||||||||||| || ||||||||||||||  ||||||||| ||| ||||||| ||| ||||| ||||||||||| |||||||||||| ||||| |    
T  27954731 tcttgtcatgaatcttcatcttttcttccattttc-gcaaggctactatgaaagtaagtagctaaatctatcctttggggttagagatacttgatcaagt 27954633  T
Q  281 taatatctactctttttgatacttaaa 307  Q
    |||||| ||||||||||||||||||||    
T  27954632 taatatgtactctttttgatacttaaa 27954606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 27951489 - 27951369
Alignment:
Q  186 tcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatacttaatcaaattaata 285  Q
    ||||||||||| || ||||||||||||||| ||||||||| ||| ||||||| ||| ||||| ||||||||||| | |||||||||| ||||| ||||||    
T  27951489 tcatgaatcttcatcttttcttccattttt-gcaaggctactatgaaagtaagtagctaaatctatcctttggggtaagagatacttgatcaagttaata 27951391  T
Q  286 tctactctttttgatacttaaa 307  Q
    | ||||||||| ||||||||||    
T  27951390 tgtactcttttcgatacttaaa 27951369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 29864468 - 29864600
Alignment:
Q  174 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 273  Q
    ||||| |||||||| |||||||| || |||||||||| ||||| |||||||| ||| ||||||| ||| ||||| ||||||||||  |||||| |||||     
T  29864468 tcatggatcttgtcttgaatcttcatcttttcttccacttttt-caaggctactatgaaagtaagtagctaaatctatcctttggagttagaggtacttg 29864566  T
Q  274 atcaaattaatatctactctttttgatacttaaa 307  Q
    |||||| |||||| || || ||||||||||||||    
T  29864567 atcaaactaatatgtattccttttgatacttaaa 29864600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 28958548 - 28958459
Alignment:
Q  176 atgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagag 266  Q
    ||||||||||||||||||||| || ||||||||||| |||||||| |||| ||| ||||||| ||| ||||| ||||||||| | ||||||    
T  28958548 atgaatcttgtcatgaatcttcatattttcttccat-ttttgcaaagctactatgaaagtaagtagctaaatctatcctttgaggttagag 28958459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 10876829 - 10876877
Alignment:
Q  108 tgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccggg 156  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgaccacacgggttcgccggg 10876877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 297
Target Start/End: Original strand, 20403620 - 20403742
Alignment:
Q  174 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 273  Q
    |||||||| |||||||||||||| |  |||||||||| |||| |||| |||| ||| ||||||| ||| ||||| | || |||||| |||||| |||||     
T  20403620 tcatgaatattgtcatgaatcttcaccttttcttcca-ttttcgcaaagctaatatgaaagtaagtagctaaatctctcatttgggtttagaggtacttg 20403718  T
Q  274 atcaaattaatatctactcttttt 297  Q
    |||||  |||||| || |||||||    
T  20403719 atcaagctaatatgtattcttttt 20403742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 37966614 - 37966666
Alignment:
Q  117 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcc 169  Q
    |||||||||||||| ||||||||| || | |||||||||||||||||| ||||    
T  37966614 attatcgatcgagctcggacgaccgcctgaggtcgccgggcggtgaaaccgcc 37966666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 10868525 - 10868583
Alignment:
Q  38 gtgagaatttttagatt--gctcaaatttttctttttgtaagtgtgttaattggctttt 94  Q
    ||||||||||| |||||  || ||||||||||||||||||| ||||||||| |||||||    
T  10868525 gtgagaattttcagattttgcccaaatttttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 26502899 - 26502810
Alignment:
Q  63 ttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||| |||||||| |||||||||| ||||||||| |||||  |||| ||||||||   |||||||||||||| ||||  || |||||||||    
T  26502899 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgcc 26502810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 26589815 - 26589904
Alignment:
Q  63 ttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||| |||||||| |||||||||| ||||||||| |||||  |||| ||||||||   |||||||||||||| ||||  || |||||||||    
T  26589815 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgcc 26589904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 31680516 - 31680350
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  31680516 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 31680417  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  31680416 ctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31680350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 12278878 - 12279044
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  12278878 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcctttgggttgggt 12278977  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||| |||||    
T  12278978 ctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 12279044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 17332569 - 17332735
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  17332569 gtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 17332668  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||    
T  17332669 ctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgccc 17332735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 37254789 - 37254621
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtc 104  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  37254789 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtc 37254690  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
    ||||||||||||||||||||||||||| || ||||| || |||||||||| ||||||||| ||||||||    
T  37254689 taatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgcccatg 37254621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 31501734 - 31501900
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| |||||||||||||  || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  31501734 gtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 31501833  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||| |||||    
T  31501834 ctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgccc 31501900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 33430470 - 33430335
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  33430470 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 33430371  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgac 139  Q
    |||||| |||||||||||||||||||||||| ||||    
T  33430370 ctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 10034076 - 10033927
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  10034076 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 10033977  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||||||||||||||| ||| |  |||||||||||    
T  10033976 ctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgcc 10033927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 13818126 - 13817977
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| || |||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  13818126 gtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 13818027  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  13818026 ctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgcc 13817977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 36293639 - 36293788
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  36293639 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 36293738  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||| |||||||||||||||||| |||||||||| | ||||||||||    
T  36293739 ctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgcc 36293788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 39434845 - 39434696
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||  ||||||||||  |||||| |||||| ||||||| |||||||||| |||||||| ||||||||| ||||||||| ||| ||    
T  39434845 gtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaatgggcttttgggttgagt 39434746  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||||||| |||||||||||||||||||||| ||||| ||| ||||||||    
T  39434745 ctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgcc 39434696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 39657524 - 39657673
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| |||||||||  |||||||| ||| ||    
T  39657524 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagt 39657623  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||| |||||||||| ||||||  | |||||||||    
T  39657624 ctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgcc 39657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 43069026 - 43068894
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||| |||||  |||| |||||||| ||||||| ||||||||||||||||||| ||||||||| | ||||||| ||||||    
T  43069026 gtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaatggacttttgggttgggt 43068927  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggac 136  Q
    |||||||| ||||||||| ||||||||||||||    
T  43068926 ctaatgtgaaaaaattattgatcgagcccggac 43068894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 16155146 - 16155016
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| |||||||  |||||||||||||| ||| ||||||||| ||||||||| ||| ||    
T  16155146 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaatgggcttttgggttgagt 16155047  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||||||||||||||||||||||||||||    
T  16155046 ctaatgtgcaaaaattatcgatcgagcccgg 16155016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 36291520 - 36291354
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||| ||||| |||||| ||||||||||||  ||| | |||||| ||||||| ||||||||||||||||||| |||||||||   ||||| | || | |    
T  36291520 gtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaatgaacttttaggttagat 36291421  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||||||| |||||| ||||||||||| ||||| |||| |||||||||||| |||||    
T  36291420 ctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgccc 36291354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 1776394 - 1776541
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| | ||||| ||||||||||||||||||| ||||||||| | ||||| | |||  |    
T  1776394 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgact 1776493  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcg 151  Q
     |||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  1776494 ttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 16333894 - 16334013
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| |||  |    
T  16333894 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgaat 16333993  T
Q  104 ctaatgtgcaaaaattatcg 123  Q
    ||||||||||||||||||||    
T  16333994 ctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 19986088 - 19985941
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||| ||||| ||||| | |||||||||||  ||||| |||||||||||| | ||||||||||||||||||| |||| |||| | ||||||| |||  |    
T  19986088 gtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaatggacttttgggttgaat 19985989  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcg 151  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  19985988 ctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 26283336 - 26283484
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| |||||||||   ||||| | ||| ||    
T  26283336 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttggttgagt 26283435  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  26283436 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 26283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 28801382 - 28801298
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccac 142  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| || |||||||    
T  28801382 caaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgaccac 28801298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 3155649 - 3155798
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||| |||||||  ||||| |||||| ||||||  ||||||||||||||| ||| ||||||||| | ||||| | ||| ||    
T  3155649 gtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttgagt 3155748  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    | |||||||||||||||| |||||||||||  ||||| |||||| |||||    
T  3155749 cgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcc 3155798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 202724 - 202622
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcg 167  Q
    ||||||| ||||| ||||| ||||||||| || |  ||||||| || |||||||||||||||||||| ||||||||  |||||| |||||||||||| ||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccg 202625  T
Q  168 ccc 170  Q
    |||    
T  202624 ccc 202622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 26543877 - 26543949
Alignment:
Q  98 ttgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||| ||||||||   ||||||  |||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  26543877 ttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 26543949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 45183130 - 45182964
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  45183130 gtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 45183031  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  45183030 ctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 11018227 - 11018399
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattg 100  Q
    |||||||||||||| |||||| ||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  11018227 attgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 11018326  T
Q  101 ggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
     |||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||    
T  11018327 agtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatg 11018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 6503584 - 6503756
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattg 100  Q
    |||||||||||||| ||| |||||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||    
T  6503584 attgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaattggcttttgggttg 6503683  T
Q  101 ggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
     ||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||    
T  6503684 agtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatg 6503756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 6930912 - 6931078
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| |||||||  |||||||||||||||||| ||||||||||||||||||| |||| |    
T  6930912 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaattggcttttgggttggat 6931011  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||| |||||||||||||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  6931012 ctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 6931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 33041102 - 33040936
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||| | |||| ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  33041102 gtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaattagcttttgggttgggt 33041003  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||| ||||||||||||| ||||||||||  ||||| ||||||||||||||||||||||| |||||    
T  33041002 ctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgccc 33040936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 22968462 - 22968610
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| | ||||||||||   ||||| |||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||  ||    
T  22968462 gtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttaagt 22968561  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22968562 ctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 19565519 - 19565685
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||| ||||||  ||||||||||||||||||| ||||||||| |  |||| | ||||||    
T  19565519 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgggt 19565618  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||||||||||| || ||||| ||||| |||||| |||||||||||||||| |||||    
T  19565619 ctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 19565685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 27935324 - 27935158
Alignment:
Q  7 tgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtcta 106  Q
    |||||||| ||||||||||||||||||   | |||||||||| ||||||| |||||||||||||||||||||||||||||  |||||||| |||||| ||    
T  27935324 tgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggttta 27935225  T
Q  107 atgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
    |||||||||||||||||||||||||||| ||||  ||| |||| ||| |||||||||| | ||||||    
T  27935224 atgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaaccacccatg 27935158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 6269444 - 6269592
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  6269444 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 6269543  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  6269544 ctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgc 6269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 19390295 - 19390146
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| | ||||| | ||| ||    
T  19390295 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatagacttttaggttgagt 19390196  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19390195 ctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcc 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 45336023 - 45335858
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||| |||||||| ||||||| || |||||||||||||||| |||||||| || ||||| | ||||||    
T  45336023 gtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaa-tgactttttggttgggt 45335925  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||| ||||||||||||| ||| |||| ||||| |||| |||||||||||||||||| |||||    
T  45335924 ctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 45335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 34084140 - 34084289
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| | ||||| ||||||||||||||||||| ||||||||| | ||||| | |||  |    
T  34084140 gtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgaat 34084239  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
     ||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  34084240 ttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 39771932 - 39771791
Alignment:
Q  11 aaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgt 110  Q
    |||| ||||| | ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| ||||||||| ||| |||||||||    
T  39771932 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 39771833  T
Q  111 gcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    |||||||||||||| ||||||||| ||||| |||||||||||    
T  39771832 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 39771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 35514411 - 35514255
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| |||||||||||   ||||||||||| | ||||  |||||||||||||||||    |||||||| | ||||||| |||| |    
T  35514411 gtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttctttttgt----gtgttaatggacttttgggttggat 35514316  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 164  Q
    ||| | ||| |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  35514315 ctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaa 35514255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 40081782 - 40081893
Alignment:
Q  28 ctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcg 127  Q
    |||||||  ||||| |||||| | ||||| ||||||||||||||||||| |||||||||  |||||||| ||| ||||||||| ||||||||||||||||    
T  40081782 ctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgagcttttgg-ttgagtctaatgttcaaaaattatcgatcg 40081880  T
Q  128 agcccggacgacc 140  Q
    ||||||| |||||    
T  40081881 agcccgggcgacc 40081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 5135364 - 5135285
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacg 137  Q
    |||||||||||||||||||||||||||||  |||||| | ||||||||||||| ||||||| |||||||||||| |||||    
T  5135364 caaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcctggacg 5135285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 25805039 - 25805172
Alignment:
Q  174 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagtta-aatatatcctttgggattagagatactt 272  Q
    ||||||||||||||||||||||| || |||||||||| |||||||||||||| ||| ||||||  | | || ||| ||||||||||| |||||| ||||     
T  25805039 tcatgaatcttgtcatgaatcttcatcttttcttcca-tttttgcaaggctactatgaaagtatgtggctataatctatcctttggggttagaggtacta 25805137  T
Q  273 aatcaaattaatatctactctttttgatacttaaa 307  Q
     ||||| ||||||| |||||||||| || ||||||    
T  25805138 gatcaagttaatatgtactcttttttatccttaaa 25805172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 6891035 - 6890981
Alignment:
Q  116 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgccc 6890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 5354758 - 5354698
Alignment:
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 164  Q
    ||||||||  |||||||  |||||||||||| ||||| |||||||||||||||||||||||    
T  5354758 ctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgccgggcggtgaaa 5354698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 22922205 - 22922157
Alignment:
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||||||||||||| ||||||||||||||  ||||| |||||| |||||    
T  22922205 taatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgcc 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 43143599 - 43143771
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattg 100  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  43143599 attgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 43143698  T
Q  101 ggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
     ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||||||    
T  43143699 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatg 43143771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 30216760 - 30216919
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||    
T  30216760 gtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggt 30216859  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaa 163  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  30216860 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaa 30216919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 3292914 - 3293080
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  3292914 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 3293013  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| |||||    
T  3293014 ctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgccc 3293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 6690253 - 6690419
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  6690253 gtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 6690352  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  6690353 ctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 6690419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 42333791 - 42333963
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattg 100  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  42333791 attgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 42333890  T
Q  101 ggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
     |||||||||||||||||||||||| |||||||||||||| |||||| |||| || |||||||| || |||||    
T  42333891 agtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgctggacggtgaaaccgtccatg 42333963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 50205095 - 50205261
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  |||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||| |||| |    
T  50205095 gtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaattggcttttgggttggat 50205194  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||| ||||||| |||||||| |||||    
T  50205195 ctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgccc 50205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 10352902 - 10353068
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||| ||||||| |||||||||| |||||||| ||||||||| | ||||| | ||||||    
T  10352902 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggt 10353001  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||| |||||    
T  10353002 ctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgccc 10353068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 48989477 - 48989317
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  | |||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||  ||||||    
T  48989477 gtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatggacttttgagttgggt 48989378  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 164  Q
     |||||||||||||||||||||||| |||||  |||| ||||| |||| ||||||||||||    
T  48989377 ttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaa 48989317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 29319723 - 29319869
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||| ||||||  ||||| |||||| ||||||||||||||||||||||||||| ||||||||| || |||||| ||| ||    
T  29319723 gtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgggattttgggttgagt 29319822  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtc 150  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||    
T  29319823 ctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtc 29319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 44156800 - 44156670
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  || ||||||||| ||||||  |||| |||||||||||||||||||||||||||||||||| ||||||    
T  44156800 gtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaattggcttttgggttgggt 44156701  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||||||||||||||||| | ||||||||    
T  44156700 ctaatgtgcaaaaattatcggttgagcccgg 44156670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 20129459 - 20129311
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||  ||||||||||   ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  20129459 gtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 20129360  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  20129359 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 20129311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 26448201 - 26448036
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||||| |||||||||  | |||||||||| ||||||| ||||||||| ||||||||||||||||||| | ||||||| || | |    
T  26448201 gtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggttagat 26448103  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
     ||||||||||||||||||||||||| |||||||| | | ||| ||||||||||||||||| |||||    
T  26448102 ttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgccc 26448036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 25930857 - 25930708
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| | ||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  25930857 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 25930758  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
     ||||||||||||||||| |||||||||||| ||||| ||| ||||||||    
T  25930757 ttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgcc 25930708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 28877268 - 28877434
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||| | ||||||||||||||| |||| ||||||||| |||||| | |||  |    
T  28877268 gtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgttaattagcttttaggttgaat 28877367  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||||||||||||| |||||   ||||| | |||||||  ||| |||||||| |||||    
T  28877368 ctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgccc 28877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 35546102 - 35545977
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||| |||||| |||||  |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||    
T  35546102 gtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttgggttgggt 35546003  T
Q  104 ctaatgtgcaaaaattatcgatcgag 129  Q
    || ||| ||||||||| |||||||||    
T  35546002 ctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 29996001 - 29996167
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||| ||| ||||||||||| |||||||  ||  |||||||| ||||||| |||||||||||||| |||| ||||||||| | ||||| | ||| ||    
T  29996001 gtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaatggactttttggttgagt 29996100  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||| |||||||||||||||||| ||||||||||  ||||| ||| |||||||||||| |||||    
T  29996101 ctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 26439304 - 26439445
Alignment:
Q  11 aaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgt 110  Q
    |||| ||||| | ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| ||||||||| ||| |||||||||    
T  26439304 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 26439403  T
Q  111 gcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    |||||||||||||| ||||||||| ||||| |||||||||||    
T  26439404 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 26439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 30110051 - 30109942
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggc 157  Q
    ||||||||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||||||||| |||| |||||  ||||||||| |||||    
T  30110051 caaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcgggc 30109952  T
Q  158 ggtgaaatcg 167  Q
    ||||||||||    
T  30109951 ggtgaaatcg 30109942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 34407309 - 34407450
Alignment:
Q  11 aaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgt 110  Q
    |||| ||||| | ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| ||||||||| ||| |||||||||    
T  34407309 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 34407408  T
Q  111 gcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    |||||||||||||| ||||||||| ||||| |||||||||||    
T  34407409 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 34407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 9417541 - 9417409
Alignment:
Q  174 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 273  Q
    ||||||||||| ||||||||||| || ||| ||||||||||| ||||||||  ||| ||||||||||| ||||| |||||||| || ||||||||||||     
T  9417541 tcatgaatcttttcatgaatcttcatctttccttccattttt-gcaaggctgctatgaaagtaactagctaaatctatcctttagggttagagatacttt 9417443  T
Q  274 atcaaattaatatctactctttttgatacttaaa 307  Q
    ||||| ||||||| ||||||||||||||||||||    
T  9417442 atcaagttaatatgtactctttttgatacttaaa 9417409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 36382364 - 36382512
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||  |||||||||||||| |||| ||||||||| | ||||| | ||| ||    
T  36382364 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttctttt-gtaaatgtgttaatggactttttggttgagt 36382462  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
     ||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  36382463 ttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 13012337 - 13012189
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| | |||  |    
T  13012337 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgaat 13012238  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  13012237 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 13012189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 40529164 - 40529028
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| ||||||||||| |||||| |||||| | ||||  ||||||||||||||||||| |||||||||  | |||| | ||| ||    
T  40529164 gtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatgagtttttaggttgagt 40529065  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgacc 140  Q
     ||||||||||||||||||||||||| ||||||||||    
T  40529064 ttaatgtgcaaaaattatcgatcgagtccggacgacc 40529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 47500922 - 47500774
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||  ||| |||||||||  |||||| | ||| ||    
T  47500922 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaatgagctttttggttgagt 47500823  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  47500822 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 47500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 1817866 - 1817752
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||| ||||| |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||| ||| ||| ||||| | |||||||||||| |    
T  1817866 gtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtattaatggacttttggattggat 1817767  T
Q  104 ctaatgtgcaaaaat 118  Q
    |||||||||||||||    
T  1817766 ctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 30077649 - 30077814
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| | |||||||||||  ||| | |||||| ||||||  ||||||||||||||||||| |||||||||   ||||| | ||||||    
T  30077649 gtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgggt 30077748  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||| |||||||| ||||| || ||||| |||| ||||| |||||||||||| |||||    
T  30077749 ctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgccc 30077814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 48130061 - 48129950
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggc 157  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||||||||| |||    ||| |||||||||||    
T  48130061 caaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcga----ccgaggtcgccgggc 48129966  T
Q  158 ggtgaaatcgcccatg 173  Q
    ||| ||| ||||||||    
T  48129965 ggttaaaccgcccatg 48129950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 17511252 - 17511377
Alignment:
Q  5 tgtgctaaattaaatt-ccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||||||| ||||| || |||||||||||  ||| | |||||| | ||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  17511252 tgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 17511351  T
Q  104 ctaatgtgcaaaaattatcgatcgag 129  Q
    ||||||||||||||||||||||||||    
T  17511352 ctaatgtgcaaaaattatcgatcgag 17511377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 43356046 - 43355905
Alignment:
Q  11 aaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgt 110  Q
    |||| ||||| | ||||||||||   ||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| ||||||||| ||| |||||||||    
T  43356046 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 43355947  T
Q  111 gcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    |||||||||||||| ||||||||| ||||  || ||||||||    
T  43355946 gcaaaaattatcgaccgagcccgggcgactgcctggggtcgc 43355905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 13392899 - 13392970
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgta 75  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  13392899 gtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13392970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 13396038 - 13396109
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgta 75  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  13396038 gtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13396109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 6235669 - 6235577
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttgg 96  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| | ||||| ||||||||||||||||||| ||||||||| | |||||||    
T  6235669 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggacttttgg 6235577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  60 aatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcga 128  Q
    ||||||| |||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 27363446 - 27363361
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||   |||||||||||||| ||||| |||| |||||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgcc 27363361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 45194266 - 45194165
Alignment:
Q  63 ttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtga 162  Q
    |||| ||||||||||||||||||| | ||||||| ||| || ||||||||||||||||| ||||||| |||| | | | || ||||||| ||||||||||    
T  45194266 ttttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgtcgggcggtga 45194167  T
Q  163 aa 164  Q
    ||    
T  45194166 aa 45194165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 49908782 - 49908836
Alignment:
Q  116 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 49908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 7769369 - 7769308
Alignment:
Q  112 caaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
    ||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatg 7769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 5517494 - 5517548
Alignment:
Q  116 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgccc 5517548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 17555032 - 17554979
Alignment:
Q  117 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||| |||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgccc 17554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 6212029 - 6212082
Alignment:
Q  117 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||| ||| ||||| |||| ||||||||| |||||||| |||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgccc 6212082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 13392989 - 13393054
Alignment:
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||| ||||||| | |||||| |||||||| |||||  |||||||||| ||||||||||| |||||    
T  13392989 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13393054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 13396128 - 13396193
Alignment:
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||| ||||||| | |||||| |||||||| |||||  |||||||||| ||||||||||| |||||    
T  13396128 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13396193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 50720476 - 50720529
Alignment:
Q  116 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcc 169  Q
    |||||| ||| |||||||| ||||| |||| |||||||||||||||||| ||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 4404160 - 4403988
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattg 100  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||    
T  4404160 attgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 4404061  T
Q  101 ggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
     ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| | |||||| || |||||    
T  4404060 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccggccagtgaaaccgtccatg 4403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 23402257 - 23402091
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||| ||||| ||||| |||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  23402257 gtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggt 23402158  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  23402157 ctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 23402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 34136840 - 34137012
Alignment:
Q  1 attgtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattg 100  Q
    |||||||||||||| ||||| |||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||    
T  34136840 attgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttg 34136939  T
Q  101 ggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
     ||||||||||||||||||||||||||||||||| ||||| | |||||||||| | |||||||| | ||||||    
T  34136940 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatg 34137012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 16788043 - 16788196
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||    
T  16788043 gtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 16788142  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggc 157  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  16788143 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccgggc 16788196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 9877369 - 9877242
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| || |||    
T  9877369 gtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttaggt 9877270  T
Q  104 ctaatgtgcaaaaattatcgatcgagcc 131  Q
    ||||||||||||||||||| ||||||||    
T  9877269 ctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 21692224 - 21692356
Alignment:
Q  174 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 273  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||| ||| ||||||| ||| ||||| ||||||||||| ||||||||||||     
T  21692224 tcatgaatcttgtcatgaatcttcatcttttcttccatttt-tgcaaggctactatgaaagtaagtagctaaatctatcctttggggttagagatacttg 21692322  T
Q  274 atcaaattaatatctactctttttgatacttaaa 307  Q
    ||||| ||||||| ||||||||||||||||||||    
T  21692323 atcaagttaatatgtactctttttgatacttaaa 21692356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 36408700 - 36408540
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||| ||||| |||||| |||||||||| |  ||| |||||||| | |||||  ||| |||||||||||||| ||||||||| | ||||||| |||| |    
T  36408700 gtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaatggacttttgggttggat 36408601  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 164  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  36408600 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaa 36408540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 2729214 - 2729380
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||  ||||||||||||  | ||||| |||| | |||||  |||  ||||||||| ||||||||||||| |||||||||||||| |    
T  2729214 gtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgttaatgggcttttggattggat 2729313  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
     ||||||| |||||||||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  2729314 ttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgccc 2729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 29728404 - 29728553
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||  |||||||||||  ||| | |||||| ||||||| ||||||||||||||||||| |||||||||  |||||||| ||| ||    
T  29728404 gtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagt 29728503  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||| ||||||||||||| ||| |||||  |||||||||||    
T  29728504 ctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgcc 29728553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 3648812 - 3648947
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| | ||||| |||  ||||| |||||| ||||||| |||| |||||||||||||| ||||||||| ||||||||| ||| ||    
T  3648812 gtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagt 3648911  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgac 139  Q
    |||||||| |||||||||||||||||||||| ||||    
T  3648912 ctaatgtgaaaaaattatcgatcgagcccgggcgac 3648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 15838434 - 15838286
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| |||||||||||||| |||| ||||||||| | ||||| | ||| ||    
T  15838434 gtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttt-gtaaatgtgttaatggactttttggttgagt 15838336  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
     |||||||||||||||||| |||||||||||  |||| ||||||||||||    
T  15838335 ttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcc 15838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 39914663 - 39914516
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||| ||||| ||| |||||||||  |||||| | ||| ||    
T  39914663 gtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgttaatgagctttttggttgagt 39914565  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  39914564 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 3435385 - 3435288
Alignment:
Q  39 tgagaatttttagatt--gctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    |||||||||| |||||  || ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||    
T  3435385 tgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgg 3435288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 42231086 - 42230971
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||| |||||||||||| || |||||||||| | ||||| |||||||||||||||||||  |||||||| | ||||||  |||| |    
T  42231086 gtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaa--gtgttaatggacttttgagttggat 42230989  T
Q  104 ctaatgtgcaaaaattat 121  Q
     |||||||||||||||||    
T  42230988 ttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  60 aatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagc 130  Q
    ||||||| ||||| ||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 10397122 - 10397215
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtg 161  Q
    ||||| ||| ||||||||| ||||||||| |||   |||||||| | ||||||||||| |||||||| |||   ||||| ||||||||||||||    
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtg 10397215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 28996879 - 28996713
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||    
T  28996879 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttaggttgggt 28996780  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||    
T  28996779 ctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgccc 28996713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 18339255 - 18339106
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  18339255 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttagattgggt 18339156  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  18339155 ctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 29743432 - 29743266
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||| ||||||| ||||||||||||| ||||| |||||||||   ||||| | ||||||    
T  29743432 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgggt 29743333  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||||||||||| |||||||| | ||| |||||| ||| ||| |||||||| |||||    
T  29743332 ctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgccc 29743266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 34948776 - 34948925
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| | ||| |||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  34948776 gtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 34948875  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||||||||||||||||||||||||||| || ||||| || |||||||||    
T  34948876 ctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgcc 34948925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 14355017 - 14354885
Alignment:
Q  174 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 273  Q
    ||||||||||||||| ||||||| || ||||||||||||||| ||||||||| ||| ||||||| ||| ||||| ||||||||||| ||||||||||||     
T  14355017 tcatgaatcttgtcacgaatcttcatcttttcttccattttt-gcaaggctactatgaaagtaagtagctaaatctatcctttggggttagagatacttg 14354919  T
Q  274 atcaaattaatatctactctttttgatacttaaa 307  Q
    ||||| ||||||| ||||||||||||||||||||    
T  14354918 atcaagttaatatgtactctttttgatacttaaa 14354885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 13837970 - 13837821
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  ||||| |||||| ||||||| ||||||||||||||||||| |||||| ||  |||||||| ||| ||    
T  13837970 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgtgcttttgggttgagt 13837871  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||| ||||||||||||||||| ||||  ||| | ||||||||||||    
T  13837870 ctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgcc 13837821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 398766 - 398618
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| | ||| ||    
T  398766 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagt 398667  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  398666 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 398618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 33229354 - 33229484
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| |||| ||||||| |||||   ||| |||||||| ||||||| |||||||||||||||| || ||||||||| | ||||||| ||||||    
T  33229354 gtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaatggacttttgggttgggt 33229453  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    ||||||| ||||||| |||||||||||||||    
T  33229454 ctaatgtacaaaaatgatcgatcgagcccgg 33229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 24697899 - 24698000
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcg 167  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||| |||||||| |||    |||||||||||||||||||||| ||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccg 24697998  T
Q  168 cc 169  Q
    ||    
T  24697999 cc 24698000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 31028436 - 31028542
Alignment:
Q  58 caaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggc 157  Q
    |||| ||| |||||||||| |||||||||  |||||| | |||| ||||||||||||||||||||||||||| |||| | ||| | ||||||||||||||    
T  31028436 caaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccgggc 31028535  T
Q  158 ggtgaaa 164  Q
    |||||||    
T  31028536 ggtgaaa 31028542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 13647053 - 13647000
Alignment:
Q  117 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgccc 13647000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 34385519 - 34385572
Alignment:
Q  117 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||||||||| || | ||| ||||||||||||||||||||||| |||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgccc 34385572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 24072625 - 24072576
Alignment:
Q  76 agtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgat 125  Q
    ||||||||||| || |||||| || | |||||||||||||||||||||||    
T  24072625 agtgtgttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 24695572 - 24695515
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgat 125  Q
    ||||||||||||||||||| ||||||||| ||| | |||||||  |||||| ||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgat 24695515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 5379 - 5230
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  5379 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttagattgggt 5280  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  5279 ctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 35907700 - 35907532
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtc 104  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||| | |||| ||||||||||||||||||  |||||||||||||| |||||||    
T  35907700 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaattggcttttgggttgggtc 35907601  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 173  Q
    |||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||| ||||||||    
T  35907600 taatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccatg 35907532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 17445461 - 17445296
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtc 104  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  17445461 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatc 17445362  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||| |||||||||| |||| ||||||| ||||| |  |||||||||||||  ||||| |||||    
T  17445361 taatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgccc 17445296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 321396 - 321561
Alignment:
Q  5 tgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtc 104  Q
    |||| ||||| ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||| ||||||||| | ||||||| |||| ||    
T  321396 tgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaatggacttttgggttggatc 321495  T
Q  105 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||  ||||||||||||||||||||||||||||| ||||   |||||||| ||||||| |||||    
T  321496 taatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaaccgccc 321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 7433594 - 7433449
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| | |||||||||||  ||||| |||||||||||||| |||| |||||||||||||| ||||||||| ||||||||| ||| ||    
T  7433594 gtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagt 7433495  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggt 149  Q
    |||||||||||||||||| |||||||| ||| ||||| ||||||||    
T  7433494 ctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggt 7433449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 32982076 - 32982223
Alignment:
Q  6 gtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtct 105  Q
    ||||||||| ||||||| |||||||||||  ||||| |||||| ||||||  ||||||||||||||||||| | ||||||| ||||||| | ||||||||    
T  32982076 gtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaatgggcttttaggttgggtct 32982175  T
Q  106 aatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    |||||||||||||||||||||| |||||  ||||| ||||||||||||    
T  32982176 aatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 3829132 - 3828967
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||| |||||||||||  | ||| |||||| ||||||| |||||||||||||||||||||||||||||   ||||||| ||||||    
T  3829132 gtgtgctaaataaaattcc-agacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttgggttgggt 3829034  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
     |||||||||||||||||||||||| ||||  |||||  ||||||| |||||| | ||||| |||||    
T  3829033 ttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 26144404 - 26144256
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| | ||| ||    
T  26144404 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagt 26144305  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26144304 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 26144256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 42310964 - 42311089
Alignment:
Q  9 ctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaat 108  Q
    |||||| ||||| | |||| ||||||  ||||| |||||| ||||||| ||||||||||||||||||| ||||||||  ||||||||| ||| |||||||    
T  42310964 ctaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaacgggcttttgggttgagtctaat 42311063  T
Q  109 gtgcaaaaattatcgatcgagcccgg 134  Q
    ||||||||||||||||||||||||||    
T  42311064 gtgcaaaaattatcgatcgagcccgg 42311089  T

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Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 33489815 - 33489670
Alignment:
Q  27 cctatttgaatgtgagaatttttagatt--gctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcga 124  Q
    ||||||||  |||||||||||| |||||  ||||||||||||||||| |||||||||||||| ||||||| | ||| ||||||||| |||||||||||||    
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T
Q  125 tcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
     | | |||| ||||||  |||||||||||||| ||||||| |||||    
T  33489715 acaatcccgaacgaccgtccggggtcgccgggtggtgaaaccgccc 33489670  T

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Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 41972314 - 41972458
Alignment:
Q  27 cctatttgaatgtgagaatttttagattgct--caaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcga 124  Q
    ||||||||  |||||||||||| |||||  |  ||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||    
T  41972314 cctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcga 41972413  T
Q  125 tcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||| || ||||| ||||||||||| || ||||| || |||||    
T  41972414 tcgagccagg-cgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

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Target: chr1; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 393 - 459
Target Start/End: Original strand, 41507887 - 41507953
Alignment:
Q  393 atgcttttgtcaaaacatcaactgtttaagagttatgatgtgagagataccggcccttggtttttgt 459  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41507887 atgcttttgtctaaacatcaactgtttaagacttatgatgtgagagataccggcccttggtttttgt 41507953  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 35951427 - 35951497
Alignment:
Q  68 tttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacga 138  Q
    ||||||| ||||||||||| |||| |||| || |  ||||||| |||||||||||||||||||||||||||    
T  35951427 tttttgttagtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccggacga 35951497  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 44352614 - 44352677
Alignment:
Q  117 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatgtcatgaa 180  Q
    |||||||||||||||||| ||||| ||||||||||||||  ||||||| ||||| ||| |||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccctgttatgaa 44352677  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 31867014 - 31866960
Alignment:
Q  116 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    |||||||| |||| ||||| ||||| ||||||||||||||||||||||| |||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31866960  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 48901207 - 48901288
Alignment:
Q  88 ggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||||||| ||||| |||||||||| |||||||||||||| ||||| | ||| ||||| || ||||||||||| || |||||    
T  48901207 ggcttttgggttgggcctaatgtgcataaattatcgatcgaccccgg-ccaccgcccggagttgccgggcggtggaaccgccc 48901288  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 23313342 - 23313257
Alignment:
Q  50 agattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggtctaatgtgcaa-aaattatcgatcgagcccgg 134  Q
    ||||||| ||||||||||||||||||| |||||||||   |||||   ||| ||||||||||||| |||| ||| |||||||||||    
T  23313342 agattgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgg 23313257  T

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Target: scaffold0041 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 53074 - 52941
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||| ||   |    
T  53074 gtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttgggttaaat 52975  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacg 137  Q
    ||||||||||||||||||||||||||||||||||    
T  52974 ctaatgtgcaaaaattatcgatcgagcccggacg 52941  T

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Target: scaffold0154 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 31629 - 31463
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||| | |||||||||||   ||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||| ||||||    
T  31629 gtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggt 31530  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||| ||||||||||||||||||||||||||| |||||  | |||||||||||||| ||||| |||||    
T  31529 ctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgccc 31463  T

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Target: scaffold0069 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 17991 - 17842
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    ||||||||||| ||||| | ||||||||||  |||||| |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||    
T  17991 gtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 17892  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 153  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  17891 ctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgcc 17842  T

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Target: scaffold0002 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 480475 - 480623
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| | ||| ||    
T  480475 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagt 480574  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  480575 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 480623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 671 - 523
Alignment:
Q  4 gtgtgctaaattaaattccgagacctatttgaatgtgagaatttttagattgctcaaatttttctttttgtaagtgtgttaattggcttttggattgggt 103  Q
    |||||| |||| ||||||| ||||||||||   ||||| |||||| | ||||| ||||||||||||||| ||| |||||||||  |||||| | ||| ||    
T  671 gtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagt 572  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  571 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 523  T

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Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 393 - 459
Target Start/End: Original strand, 159349 - 159414
Alignment:
Q  393 atgcttttgtcaaaacatcaactgtttaagagttatgatgtgagagataccggcccttggtttttgt 459  Q
    ||||||||||| || || ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  159349 atgcttttgtccaa-cagcaactgtttaagactcatgatgtgagagataccggcccttggtttttgt 159414  T

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Target: scaffold0769 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 1332 - 1260
Alignment:
Q  98 ttgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 170  Q
    ||||| ||||||||   ||||||  |||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  1332 ttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 1260  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 194083 - 194021
Alignment:
Q  98 ttgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggt 160  Q
    ||||| ||||||||   ||||||  |||||||||||| ||||| |||||||||||||||||||    
T  194083 ttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggt 194021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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