View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_10 (Length: 420)
Name: NF10539_low_10
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 49004522 - 49004923
Alignment:
| Q |
17 |
atataaagttacacttacacgctgtttgaaacttgaaatcatactctagatgaatgttaaatctttgaaatgtttaattgtggatttcgtgtaggtatct |
116 |
Q |
| |
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|||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49004522 |
atataatgttacacttacacactgtttgaagcttgaaatcataagctagatgaatgttaaatctttgaaatgtttaattgtggatttcttgtaggtatct |
49004621 |
T |
|
| Q |
117 |
gagctcttggaatcagggaaaacaatgtttaaggagctatgcaatgaatttgaagagaaactgattatgtgagtaatgaagttaccattgaacattcaat |
216 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49004622 |
gagcttttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgtgagttatgaagttaccattgaacattcaat |
49004721 |
T |
|
| Q |
217 |
gtttaaactatctttcac-ttaaatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttga |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004722 |
gtttaaactatctttcactttaaatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttga |
49004821 |
T |
|
| Q |
316 |
aaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaaatgaggaagccaatgctcttctgcaaaatgctcgatatgtacttcatctctct |
415 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
49004822 |
aaaatggcaggaagaaatcaaagaactccgagcactcgatgcctcaaatgaggaagccaatgctcttctgcaaaatgctcgatatgtacttcagctcact |
49004921 |
T |
|
| Q |
416 |
cg |
417 |
Q |
| |
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|| |
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|
| T |
49004922 |
cg |
49004923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 64 - 417
Target Start/End: Original strand, 38116767 - 38117120
Alignment:
| Q |
64 |
agatgaatgttaaatctttgaaatgtttaattgtggatttcgtgtaggtatctgagctcttggaatcagggaaaacaatgtttaaggagctatgcaatga |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116767 |
agatgaatgttaaatctttgaaatgtttaattgtggatttcatgtaggtatctgagctcttggaatcagggaaaacaatgtttaaggagctatgcaatga |
38116866 |
T |
|
| Q |
164 |
atttgaagagaaactgattatgtgagtaatgaagttaccattgaacattcaatgtttaaactatctttcacttaaatattgttagtttttgactttttat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38116867 |
atttgaagagaaactgattatgtgagtaatgaagttaccattgaacattcaatgtttaaactatctttcacttaaatattgttagtttttgactttttat |
38116966 |
T |
|
| Q |
264 |
ggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaaa |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116967 |
ggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaaa |
38117066 |
T |
|
| Q |
364 |
tgaggaagccaatgctcttctgcaaaatgctcgatatgtacttcatctctctcg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
38117067 |
tgaggaagccaatgctcttctgcaaaatgctcgatatgtacttcagctcactcg |
38117120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 38160545 - 38160947
Alignment:
| Q |
17 |
atataaagttacacttacacgctgtttgaaacttgaaatcatactctagatgaatgttaaatctttgaaatgtttaattgtggatttcgtgtaggtatct |
116 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38160545 |
atataaagttacacctacacactgtttgaagcttgaaatcatactgtagatgaatgttaaatctttgaaatgtttaattgtggatttcttgtaggtatct |
38160644 |
T |
|
| Q |
117 |
gagctcttggaatcagggaaaacaatgtttaaggagctatgcaatgaatttgaagagaaactgattatgtgagtaatgaagttaccattgaacattcaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
38160645 |
gagctcttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgcgagttatgaagttaccattgaacattcaaa |
38160744 |
T |
|
| Q |
217 |
gtttaaactatctttcac-ttaaatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttga |
315 |
Q |
| |
|
| | |||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||||| || |
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| T |
38160745 |
gctgaaactatctttcacttttaatattgttagtttttgactttttgtggtgttattcttttaactttccaatatgcaggattcacaaggagcaggtcga |
38160844 |
T |
|
| Q |
316 |
aaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaaatgaggaagccaatgctcttctgcaaaatgctcgatatgtacttcatctctct |
415 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
38160845 |
aaaatggcaggaagaaatcaaagaactgcgtgcacttgatgcctcaaatgaggaagccaatgctcttctgcaaaatgctcgatatgtacttcagctcact |
38160944 |
T |
|
| Q |
416 |
cga |
418 |
Q |
| |
|
||| |
|
|
| T |
38160945 |
cga |
38160947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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