View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_11 (Length: 416)
Name: NF10539_low_11
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 42527965 - 42528362
Alignment:
| Q |
1 |
aataaataaggaacagattccatagtttctcacttctagctaagagagtggttagaacttgagagaaagatgtcatgatatacataa---ggttggtata |
97 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42527965 |
aataaataaggaacagattccatagttgctcacttctagctaagagagtggttagaacttgagagaaagatgtcatgatatacataataaggttggtata |
42528064 |
T |
|
| Q |
98 |
gaaccatggctgtcattgcaacgttgtttgttctcatgtccttctttctgtttaccttttacttgcttgtttgtttgttatctggatgttgtttaaagtt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528065 |
gaaccatggctgtcattgcaacgttgtttgttctcaggtccttctttctgtttaccttttacttgcttgtttgtttgttatctggatgttgtttaaagtt |
42528164 |
T |
|
| Q |
198 |
tttatatcacaaggtacttgtgctaattgggagatacctaatctaatcatatggtgnnnnnnnctttctttctagactttgattatagtctagcactcta |
297 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42528165 |
tttatatcacaaggtacttgtgctaattgggagatccctaatc--atcatatggtgtttttttctttctttctagactttgattatagtctagcactcta |
42528262 |
T |
|
| Q |
298 |
gcataatcttgtacaacgtttataattgtgactcttcttgattaaaaaactaaggagcgtgacgatcttagatgcatatgtataaaaagataaaaatggt |
397 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42528263 |
gcataatcttgtacaacgtttataattgtaactcttcttgattaaaaaactaaggagcgtgacgatcttagatgcatatgtat--aaagataaaaatggt |
42528360 |
T |
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