View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_12 (Length: 402)
Name: NF10539_low_12
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 45273924 - 45273547
Alignment:
| Q |
19 |
attgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273924 |
attgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaa |
45273825 |
T |
|
| Q |
119 |
agactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45273824 |
agactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcaga |
45273725 |
T |
|
| Q |
219 |
gtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaccaaattcaccgct |
318 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
45273724 |
gtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagct |
45273625 |
T |
|
| Q |
319 |
ggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45273624 |
ggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttc |
45273547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 45282168 - 45281791
Alignment:
| Q |
19 |
attgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282168 |
attgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaa |
45282069 |
T |
|
| Q |
119 |
agactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282068 |
agactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcaga |
45281969 |
T |
|
| Q |
219 |
gtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaccaaattcaccgct |
318 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
45281968 |
gtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagct |
45281869 |
T |
|
| Q |
319 |
ggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
45281868 |
ggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttc |
45281791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 45293508 - 45293131
Alignment:
| Q |
19 |
attgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaa |
118 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
45293508 |
attgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatggaaggttttagcaa |
45293409 |
T |
|
| Q |
119 |
agactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcaga |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| | | |||||||||||||||||||| |
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|
| T |
45293408 |
agacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaaacacatgttactatgcaga |
45293309 |
T |
|
| Q |
219 |
gtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaccaaattcaccgct |
318 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
45293308 |
gtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgct |
45293209 |
T |
|
| Q |
319 |
ggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
396 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||| ||||| |
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|
| T |
45293208 |
ggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttc |
45293131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 45302468 - 45302091
Alignment:
| Q |
19 |
attgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaa |
118 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
45302468 |
attgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatggaaggttttagcaa |
45302369 |
T |
|
| Q |
119 |
agactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcacaacacatgttactatgcaga |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
45302368 |
agacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaaacacatgttactatgcaga |
45302269 |
T |
|
| Q |
219 |
gtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaccaaattcaccgct |
318 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
45302268 |
gtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgct |
45302169 |
T |
|
| Q |
319 |
ggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
396 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||| ||||| |
|
|
| T |
45302168 |
ggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttc |
45302091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 45270392 - 45269985
Alignment:
| Q |
19 |
attgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatggaagtatttagcaa |
118 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||| |||| |||| ||||||| || ||||||||||||||||||||||| | || | ||| |
|
|
| T |
45270392 |
attgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaaaattcacagttaggtcttacttgggcagaccatggcaaaatgaatcaa |
45270293 |
T |
|
| Q |
119 |
agactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaa------------------tcacaa |
200 |
Q |
| |
|
|| | ||| ||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| || ||||||||| | | || |
|
|
| T |
45270292 |
aggcagtcatcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaacaagccagaaaaacatcatgaaaa |
45270193 |
T |
|
| Q |
201 |
cacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgag |
300 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||| |||| |
|
|
| T |
45270192 |
cacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgag |
45270093 |
T |
|
| Q |
301 |
gctaccaaattcaccgctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacc |
388 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||||| |
|
|
| T |
45270092 |
gctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactacc |
45269993 |
T |
|
| Q |
389 |
tttgcttc |
396 |
Q |
| |
|
|| ||||| |
|
|
| T |
45269992 |
ttggcttc |
45269985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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