View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_13 (Length: 397)
Name: NF10539_low_13
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 33996479 - 33996839
Alignment:
| Q |
17 |
aatcctaaaatcggattcaatatatcttcccatagtcatttgttttttggtacatagtcgttgctttctatattagctgaagtgaatgtatgcacccaga |
116 |
Q |
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| T |
33996479 |
aatcccaaaatcagactcaaaatatcttcctacagtcgtttgttttttggtacatagtcgttgctttctatattagctgaagtggatgtattcacccaga |
33996578 |
T |
|
| Q |
117 |
tcttcatgtatttgaatactcaaacaaatgtattaaatgtgacaatgc----agataaatattctttttgtcaataatgcatataaatattcatttaacc |
212 |
Q |
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| T |
33996579 |
ttttcatgtattttaatattcaaacaaatgtattaaatgtgacaatgcatgtagataaatattctttttgtcaataatgcatataaatattcatttaacc |
33996678 |
T |
|
| Q |
213 |
ctattcggatgcattagctagtttacatttacatgcatgatgcatgcgttatagcctcctacttaacccgtttgattcaatgatataagttctaattaca |
312 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||| |
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| T |
33996679 |
ctattcggatgcattacctag------tttacatgcatgatgcatgcgttatagcctctaacttaacccttttgattcgatgatataa---ctaattaca |
33996769 |
T |
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| Q |
313 |
tcttcaagccttttgacttaatccaatttatttatgcatgcacatgtttatatccgtacagttggtttgttctt |
386 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33996770 |
tcttcaagccttttgacttaatcca----atttatgcatgcacatgtttatatccgtacagttggtttgttctt |
33996839 |
T |
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