View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_18 (Length: 370)

Name: NF10539_low_18
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_18
NF10539_low_18
[»] chr8 (12 HSPs)
chr8 (17-359)||(15000498-15000834)
chr8 (130-359)||(15751498-15751727)
chr8 (132-204)||(15164894-15164966)
chr8 (132-204)||(15077177-15077249)
chr8 (116-204)||(4506137-4506225)
chr8 (121-359)||(13033750-13033988)
chr8 (258-359)||(15067075-15067176)
chr8 (260-359)||(15030051-15030150)
chr8 (130-204)||(15053031-15053105)
chr8 (261-359)||(15214267-15214365)
chr8 (134-203)||(15214140-15214209)
chr8 (299-359)||(15047793-15047853)
[»] chr7 (3 HSPs)
chr7 (121-359)||(1626316-1626554)
chr7 (268-359)||(1617913-1618004)
chr7 (121-203)||(1617766-1617848)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 15000834 - 15000498
Alignment:
Q  17 cttacaacaacaatgaacttcttaatacaaaacaacttatacataaagtaatcattgatcaatacttcgacacacttcaaatgagagacctgattcacct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      |||    
T  15000834 cttacaacaacaatgaacttcttaatacaaaacaacttatacataaagtaatcattgatcaatacttcgacaaacttcaaatgagagacct------cct 15000741  T
Q  117 aacatttcttttgtgattttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaagaggtgttttttct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15000740 aacatttcttttgtgattttggatattttttctaccattgaacgggaaagataatttttccaatctcctatttcggcctttcgaaagaggtgttttttct 15000641  T
Q  217 catatcttgatgacaaaactccagatttatttacttcttgatccttcatattttcaaagcaacataaattaataatattttgaatcattctattactttc 316  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15000640 catatctcgatgacaaaactccaaatttatttacttcttgatccttcatattttcaaagcaacataaattaataatattttgaatcattctattactttc 15000541  T
Q  317 ctcttcttgagtaaaaggacaacccaagaattctgcaattctt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15000540 ctcttcttgagtaaaaggacaacccaagaattctgcaattctt 15000498  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 359
Target Start/End: Complemental strand, 15751727 - 15751498
Alignment:
Q  130 tgattttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaagaggtgttttttctcatatcttgatga 229  Q
    |||||||||||| |||||||||||||||| | |||||||| ||  ||||||||||||  || |||||||| || | ||  ||||| ||| || ||  |      
T  15751727 tgattttggatagtttttctaccattgaaggagaaaggtagttaatccaatctcctacctcagcctttcggaacaagtagtttttttca-attttccttc 15751629  T
Q  230 caaaa-ctccagatttatttacttcttgatccttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagt 328  Q
    ||||  ||||| |||||||| | ||    |||||||| |||| ||||| ||||||||| |||||||| | |||||  | |||||||||||||||||||||    
T  15751628 caaactctccaaatttatttgcctccaattccttcatctttttaaagctacataaattgataatattctcaatcacaccattactttcctcttcttgagt 15751529  T
Q  329 aaaaggacaacccaagaattctgcaattctt 359  Q
     ||||||||| ||||||| ||||||||||||    
T  15751528 gaaaggacaatccaagaactctgcaattctt 15751498  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 15164894 - 15164966
Alignment:
Q  132 attttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaaga 204  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| || ||||||||||||||    
T  15164894 attttggatagtttttcttccattgaaggggaaaggtaatttttccaatctcctactttggcctttcgaaaga 15164966  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 15077249 - 15077177
Alignment:
Q  132 attttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaaga 204  Q
    |||||||| | ||||||| |||||||| ||||||||||||||||||||||| ||| || ||||||||||||||    
T  15077249 attttggacagtttttcttccattgaaggggaaaggtaatttttccaatcttctactttggcctttcgaaaga 15077177  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 4506137 - 4506225
Alignment:
Q  116 taacatttcttttgtgattttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaaga 204  Q
    |||| |||||| | |||||||||||| ||||||| ||||| || | ||||| |||||| |||||||||||| ||| ||||||| |||||    
T  4506137 taacttttcttctatgattttggatagtttttcttccattcaaggagaaagataatttatccaatctcctacttctgcctttctaaaga 4506225  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 359
Target Start/End: Complemental strand, 13033988 - 13033750
Alignment:
Q  121 tttcttttgtgattttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaagaggtgttttttctcata 220  Q
    |||||| | ||| |||||||| | |||||| ||||||| | |||| |||||||  |||||||||||||||  ||||||||||||     |||||||||||    
T  13033988 tttcttctatgactttggataatctttctatcattgaaggagaaaagtaatttacccaatctcctatttctccctttcgaaagaaaaactttttctcata 13033889  T
Q  221 tcttgatgacaaaactccagatttatttacttcttga-tccttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctc 319  Q
      ||| ||| | |  | |||||| |||| | | |||| ||||||||| | |||||||  ||||| || || ||||||| || || || |||| |||||||    
T  13033888 gattgttgatacagtttcagattgatttccct-ttgattccttcatactctcaaagctgcataacttgattatattttcaaccactccattattttcctc 13033790  T
Q  320 ttcttgagtaaaaggacaacccaagaattctgcaattctt 359  Q
    ||||||||| |||||| | ||||  || ||||||||||||    
T  13033789 ttcttgagtgaaaggaaatcccacaaactctgcaattctt 13033750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 15067176 - 15067075
Alignment:
Q  258 tccttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattc 357  Q
    ||||||||| | |||||||  ||||| || || ||||||| ||||| || |||| |||||||||||| ||| |||||| | ||||  |||||||||||||    
T  15067176 tccttcatactctcaaagctgcataacttgattatattttcaatcactccattattttcctcttcttcagtgaaaggaaatcccacaaattctgcaattc 15067077  T
Q  358 tt 359  Q
    ||    
T  15067076 tt 15067075  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 15030150 - 15030051
Alignment:
Q  260 cttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattctt 359  Q
    ||||||| | |||||||  ||||| || || ||||||| ||||| |  |||| |||||||||||||||| |||||| | ||||  |||||||||||||||    
T  15030150 cttcatactctcaaagctgcataacttgattatattttcaatcacttcattattttcctcttcttgagtgaaaggaaatcccacaaattctgcaattctt 15030051  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 15053105 - 15053031
Alignment:
Q  130 tgattttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaaga 204  Q
    |||||||||||| | |||||| ||||||| | |||| |||||||  |||||| ||||||||  ||||||||||||    
T  15053105 tgattttggataatctttctatcattgaaggagaaaagtaatttacccaatcccctatttctccctttcgaaaga 15053031  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 15214267 - 15214365
Alignment:
Q  261 ttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattctt 359  Q
    |||||| | |||||||  ||||| || || ||||||| ||||| || |||| |||||||||||||||| ||||||   ||||  |||||||||||||||    
T  15214267 ttcatactctcaaagctgcataacttgattatattttcaatcactccattattttcctcttcttgagtgaaaggaattcccacaaattctgcaattctt 15214365  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 15214140 - 15214209
Alignment:
Q  134 tttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaag 203  Q
    |||||| | ||| ||||||||||||  |||||||||||||  |||||| ||||||||  |||||||||||    
T  15214140 tttggaaagtttctctaccattgaagaggaaaggtaatttgcccaatcccctatttctccctttcgaaag 15214209  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 15047853 - 15047793
Alignment:
Q  299 aatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattctt 359  Q
    ||||| || |||| |||||||||||||||| |||||| | ||||  |||||||||||||||    
T  15047853 aatcactccattattttcctcttcttgagtgaaaggaaatcccacaaattctgcaattctt 15047793  T

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Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 121 - 359
Target Start/End: Original strand, 1626316 - 1626554
Alignment:
Q  121 tttcttttgtgattttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaagaggtgttttttctcata 220  Q
    |||||| | ||||||||||||  || |||||||||||| | ||||| |||||  ||||||| ||||||||  |||||||||||| ||  ||||| |||||    
T  1626316 tttcttctatgattttggataacttatctaccattgaaggagaaagataattaatccaatcccctatttctccctttcgaaagaagtactttttgtcata 1626415  T
Q  221 tcttgatgacaaaactccagatttatttacttcttgatcctt-catattttcaaagcaacataaattaataatattttgaatcattctattactttcctc 319  Q
      |   |  ||| ||||||||||||||| ||||   |||||| ||| |||||||||| ||||||||| || ||||||| |||||  | ||||||||| ||    
T  1626416 aatctttcccaagactccagatttatttgcttcca-atcctttcatcttttcaaagctacataaattgattatattttcaatcacaccattactttcttc 1626514  T
Q  320 ttcttgagtaaaaggacaacccaagaattctgcaattctt 359  Q
     ||||||||||||||||||||||| || ||||||||||||    
T  1626515 ctcttgagtaaaaggacaacccaaaaactctgcaattctt 1626554  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 1617913 - 1618004
Alignment:
Q  268 tttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattctt 359  Q
    ||||||||| ||||||||| |||||||||| |||||  | |||||||||||| ||||||||||||||||||||||| || ||||||||||||    
T  1617913 tttcaaagctacataaattgataatattttcaatcacaccattactttcctcctcttgagtaaaaggacaacccaaaaactctgcaattctt 1618004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 1617766 - 1617848
Alignment:
Q  121 tttcttttgtgattttggatattttttctaccattgaacgggaaaggtaatttttccaatctcctatttcggcctttcgaaag 203  Q
    |||||| | |||||||||| |  || |||||||||||| | ||||| |||||  ||||||| |||||||| ||||||||||||    
T  1617766 tttcttctatgattttggacagcttctctaccattgaaggagaaagataattaatccaatcccctatttctgcctttcgaaag 1617848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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