View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_19 (Length: 357)
Name: NF10539_low_19
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 34597536 - 34597755
Alignment:
| Q |
17 |
gaccaaaagttacatgttatatttatatggtttagagagtgatagtttatagattaaattgatagtttattctattttaatttttataaaattgagatta |
116 |
Q |
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| T |
34597536 |
gaccaaaagttacatgttatatttatatggtttggagtgtgatagtttatagattaaattgatagttaattctattttaatttttataaaattgacttta |
34597635 |
T |
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| Q |
117 |
agatctgacaatagttaagagttaagacctaagacatgaagtgaatggtgtgctgcagacaataaagtacaacagacttagtctgagatgttttcttctg |
216 |
Q |
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| T |
34597636 |
agatctgacaat-------agttaagacctaagacatgaagtgaatggtgtgctacagacagtaaagtacaatagacttagtctgagatgttttcttctg |
34597728 |
T |
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| Q |
217 |
gttggttgaatattcaaaccacataca |
243 |
Q |
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| T |
34597729 |
gttggttgaatattcaaaccacataca |
34597755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 34624793 - 34624885
Alignment:
| Q |
164 |
gtgtgctgcagacaataaagtacaacagacttagtctgagatgttttcttctggttggttgaatattcaaaccacatacatacacacttattt |
256 |
Q |
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| T |
34624793 |
gtgtgctacagacaataaagtacaatagacttggtctgagatgttttcttctggttggttgaatattcaaaccacatacatacacacttattt |
34624885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 48483229 - 48483266
Alignment:
| Q |
52 |
agagtgatagtttatagattaaattgatagtttattct |
89 |
Q |
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| T |
48483229 |
agagtgatagtttagagattaaattgatggtttattct |
48483266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 2981304 - 2981344
Alignment:
| Q |
55 |
gtgatagtttatagattaaattgatagtttattctatttta |
95 |
Q |
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| T |
2981304 |
gtgatattttaaagattaaattgatagtttattctttttta |
2981344 |
T |
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