View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_22 (Length: 328)
Name: NF10539_low_22
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 46795101 - 46794800
Alignment:
| Q |
19 |
gtgtagcagtggaagaatgcaacaagaagaaattaggtaccctgggcctggtgcagattcaacaaatactcaacaaatgctgcaacaattgatgtcatct |
118 |
Q |
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| T |
46795101 |
gtgtagcagtggaagaatgcaacaagaagaaattaggtaccctgggcctggtgcagattcaacaaatactcaacaaatgctgcaacaattgatttcatct |
46795002 |
T |
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| Q |
119 |
tcaacatcacctgctgatagtactgaaactgaggcttatgcaagatggcgtcagcttcttcaacttcagacctatagtaacccttcttttcataatcatc |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46795001 |
tcaacatcacctgttgatagtactgaaactgaggcttatgcaagatggcgtcagcttcttcaacttcagacctatagtaacccttcttttcataatcatc |
46794902 |
T |
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| Q |
219 |
ataacctattggatagtgaaatacctagagatcatggtggatttaatgtgattgaggaatccattatgattaaaaggaacatgatgtctgctacttcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46794901 |
ataacctattggatagtgaaatacctagagatcatggtggatttaatgtgattgaggaatccattatgattaaaaggaacatgatgtctgctacttcttc |
46794802 |
T |
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| Q |
319 |
tc |
320 |
Q |
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|| |
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| T |
46794801 |
tc |
46794800 |
T |
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