View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10539_low_24 (Length: 325)
Name: NF10539_low_24
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_24 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 43534079 - 43533766
Alignment:
| Q |
12 |
atgaagttgaataatgatatgatatgatatcaggttttgttttgttgaaattcaaaatcatgatatcaatcagtaagttacttaccagcaggagaacgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43534079 |
atgaagttgaataatgatatgatatgatatcaggttttgttttgttgaaattcaaaatcatgatatcaatcagtaagttacttaccagcaggagaacgaa |
43533980 |
T |
|
| Q |
112 |
agtcgtagtctggaacttgaaaggcaggttcagagccaaggccaatctcagaaatgacagaagcaatgacagcactgagaatgactgtggaagtagtatt |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43533979 |
agtcgtagtctggaacttgaaaggcgggttcagagccaaggccaatctcagaaatgacagaagcaatgacagcactgagaatgactgtggaagtagtatt |
43533880 |
T |
|
| Q |
212 |
agtaagcgataaattagaagaatcagaatcagaaggccacaagacagactcaacagcgaagaaacaaccagcaacggcagcattgaaaccagcagagagg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43533879 |
agtaagcgataaattagaagaatcagaatcagaaggccacaagacagactcaacagcgaagaaacaaccagcaacggcagcattgaaaccagcagagagg |
43533780 |
T |
|
| Q |
312 |
ccggcagcagatcc |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43533779 |
ccggcagcagatcc |
43533766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University