View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_25 (Length: 324)
Name: NF10539_low_25
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 3644644 - 3644337
Alignment:
| Q |
1 |
ctcctatcacccttttctttcattttatttattgtaataatatgctgtttgtattggcaacagaaacaatacatagcatttggttaccataatcaagttt |
100 |
Q |
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| T |
3644644 |
ctcctatcacccttttctctcattttatttattgtaataatatgctgtttgtattggcaacagaaacaatacatagcatttggttaccataatcaagttt |
3644545 |
T |
|
| Q |
101 |
tgtaatatatcagaccattttggaaagaatatatgatttttagttaaagcaattgtgaggagccaatcattttatccttattgagatggctcaagacaag |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3644544 |
tgtaatatatcagattattttggaaagaatatatgatttttagttaaagcaattgtgaggagccaatcattctatccttattgagatggctcaagacaag |
3644445 |
T |
|
| Q |
201 |
aatacaagagtataagactatctcatttgttgataagttcaattggactatttcattgtcctgtatattaataccctctttccttggttttgtcaagttt |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3644444 |
aatataagagtataagactatctcatttgttgataagttcaattggactatttcattgtcctgtatattaataccctctttccttggttttgtcaagttt |
3644345 |
T |
|
| Q |
301 |
tctgatgt |
308 |
Q |
| |
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|||||||| |
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| T |
3644344 |
tctgatgt |
3644337 |
T |
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