View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_28 (Length: 308)

Name: NF10539_low_28
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_28
NF10539_low_28
[»] chr6 (1 HSPs)
chr6 (1-292)||(34193971-34194262)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 34193971 - 34194262
Alignment:
Q  1 aggtcacgtagatggcttgggatacaagtttgaactcgtaaccgaaaataatggaatacctattgctgaatccacaatgaatgtgaaaaagggtggccaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34193971 aggtcatgtagatggcttgggatacaagtttgaactcgtaaccgaaaataacggaatacctattgctgaatccacaatgaatgtgaaaaagggtggccaa 34194070  T
Q  101 ttttgcattgattataatgttatgaaagagtattatggattgtgttcaaggttaccaccaggtaaagggtttgtgatgagttctagtgttgaaggtgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34194071 ttttgcattgattataatgttatgaaagagtattatggattgtgttcaaggttaccaccaggtaaagggtttgtgatgagttctagtgttgaaggtgaag 34194170  T
Q  201 gaaaaattagtaaaccttttgtgcaagttggagcacaacatgttacatgtatggctgatgctgcattgtttgttgcattatctgctgctatt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34194171 gaaaaattagtaaaccttttgtgcaagttggagcacaacatgttacatgtatggctgatgctgcattgtttgttgcattatctgctgctatt 34194262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University