View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_31 (Length: 295)

Name: NF10539_low_31
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_31
NF10539_low_31
[»] chr6 (13 HSPs)
chr6 (141-280)||(17767725-17767878)
chr6 (1-62)||(17767952-17768013)
chr6 (7-60)||(14803363-14803416)
chr6 (5-76)||(2333377-2333448)
chr6 (1-76)||(15722487-15722562)
chr6 (1-76)||(3049514-3049589)
chr6 (21-76)||(16337074-16337129)
chr6 (1-76)||(30253297-30253372)
chr6 (1-76)||(32853128-32853203)
chr6 (2-76)||(21506348-21506422)
chr6 (7-76)||(29383569-29383638)
chr6 (1-73)||(23633307-23633379)
chr6 (1-73)||(30906647-30906719)
[»] chr8 (21 HSPs)
chr8 (1-76)||(6161960-6162035)
chr8 (4-76)||(43873678-43873750)
chr8 (1-76)||(3756913-3756988)
chr8 (1-76)||(39021427-39021502)
chr8 (1-56)||(2519937-2519992)
chr8 (1-76)||(7559330-7559405)
chr8 (1-76)||(22852823-22852898)
chr8 (43-76)||(26871058-26871091)
chr8 (1-76)||(44086496-44086572)
chr8 (1-76)||(7678744-7678819)
chr8 (1-67)||(12490756-12490823)
chr8 (1-76)||(21273694-21273769)
chr8 (1-60)||(24946030-24946089)
chr8 (1-76)||(27836192-27836267)
chr8 (1-76)||(41675353-41675428)
chr8 (2-76)||(41344654-41344728)
chr8 (1-38)||(27776203-27776240)
chr8 (11-64)||(33415705-33415758)
chr8 (9-74)||(43403845-43403910)
chr8 (1-73)||(6849245-6849317)
chr8 (20-76)||(45101408-45101464)
[»] chr3 (22 HSPs)
chr3 (1-64)||(41717474-41717537)
chr3 (1-76)||(43333654-43333729)
chr3 (1-76)||(44334785-44334860)
chr3 (2-76)||(46315940-46316014)
chr3 (1-76)||(43900741-43900816)
chr3 (26-76)||(21217313-21217363)
chr3 (7-76)||(22153876-22153945)
chr3 (7-72)||(30796604-30796669)
chr3 (20-76)||(35272039-35272095)
chr3 (11-75)||(35425666-35425730)
chr3 (1-49)||(41957554-41957602)
chr3 (20-76)||(51464275-51464331)
chr3 (9-76)||(622452-622519)
chr3 (1-64)||(49130878-49130941)
chr3 (1-76)||(55466970-55467045)
chr3 (2-76)||(18713615-18713689)
chr3 (1-38)||(1261359-1261396)
chr3 (7-76)||(28300638-28300707)
chr3 (7-76)||(34733281-34733350)
chr3 (1-66)||(51672885-51672950)
chr3 (1-76)||(7294083-7294159)
chr3 (20-76)||(26279896-26279952)
[»] chr5 (20 HSPs)
chr5 (9-76)||(8897394-8897461)
chr5 (1-76)||(12779590-12779665)
chr5 (1-76)||(19127136-19127211)
chr5 (7-60)||(36572719-36572772)
chr5 (7-75)||(3770996-3771064)
chr5 (1-76)||(12718364-12718439)
chr5 (1-76)||(17063877-17063952)
chr5 (1-76)||(39840693-39840768)
chr5 (2-76)||(36713163-36713237)
chr5 (1-66)||(1774267-1774332)
chr5 (1-76)||(11767974-11768049)
chr5 (1-76)||(31024989-31025064)
chr5 (1-76)||(34381024-34381099)
chr5 (2-60)||(25364822-25364880)
chr5 (2-76)||(40223770-40223844)
chr5 (1-38)||(34698825-34698862)
chr5 (13-76)||(4719662-4719726)
chr5 (13-76)||(11148523-11148587)
chr5 (20-76)||(34400630-34400686)
chr5 (1-73)||(41460131-41460203)
[»] chr4 (26 HSPs)
chr4 (1-76)||(15596408-15596483)
chr4 (2-76)||(25725679-25725753)
chr4 (7-76)||(38133992-38134061)
chr4 (1-76)||(11064073-11064148)
chr4 (1-76)||(17363242-17363317)
chr4 (1-64)||(41609663-41609726)
chr4 (1-76)||(35661581-35661656)
chr4 (2-76)||(1031767-1031841)
chr4 (1-67)||(55927005-55927071)
chr4 (7-76)||(11012153-11012222)
chr4 (43-76)||(51296215-51296248)
chr4 (8-76)||(38382123-38382191)
chr4 (7-58)||(12241088-12241139)
chr4 (1-64)||(24772695-24772758)
chr4 (1-76)||(31147243-31147318)
chr4 (7-58)||(33820326-33820377)
chr4 (1-76)||(39881014-39881089)
chr4 (1-76)||(46794485-46794560)
chr4 (2-76)||(25139940-25140014)
chr4 (2-76)||(29525870-29525944)
chr4 (26-76)||(34616362-34616412)
chr4 (26-76)||(48402349-48402399)
chr4 (26-76)||(56364269-56364319)
chr4 (7-76)||(29384187-29384256)
chr4 (1-58)||(48722099-48722156)
chr4 (20-76)||(52392228-52392284)
[»] chr2 (19 HSPs)
chr2 (4-76)||(42665799-42665871)
chr2 (1-76)||(10749663-10749738)
chr2 (1-76)||(546369-546444)
chr2 (2-76)||(44050027-44050102)
chr2 (7-76)||(7497981-7498050)
chr2 (11-76)||(18373859-18373924)
chr2 (7-76)||(43650539-43650608)
chr2 (1-76)||(2013269-2013344)
chr2 (1-76)||(11229305-11229380)
chr2 (1-76)||(22390164-22390239)
chr2 (1-76)||(23344973-23345048)
chr2 (13-76)||(30339865-30339928)
chr2 (9-76)||(35965587-35965654)
chr2 (1-76)||(42251904-42251979)
chr2 (26-76)||(25270799-25270849)
chr2 (1-38)||(11728105-11728142)
chr2 (11-64)||(36816410-36816463)
chr2 (7-76)||(43356301-43356370)
chr2 (20-76)||(4842523-4842579)
[»] chr7 (20 HSPs)
chr7 (9-76)||(38096431-38096498)
chr7 (7-60)||(44216130-44216183)
chr7 (1-76)||(17500709-17500784)
chr7 (1-76)||(17552430-17552505)
chr7 (1-76)||(21752670-21752745)
chr7 (2-76)||(31364869-31364943)
chr7 (11-76)||(41966344-41966409)
chr7 (1-58)||(42640873-42640930)
chr7 (7-60)||(42663112-42663165)
chr7 (7-76)||(43107622-43107691)
chr7 (7-58)||(30769651-30769702)
chr7 (1-76)||(47644717-47644792)
chr7 (1-75)||(5978592-5978666)
chr7 (26-76)||(7701335-7701385)
chr7 (26-76)||(46022491-46022541)
chr7 (7-76)||(28109969-28110038)
chr7 (7-76)||(33212054-33212123)
chr7 (1-66)||(45607046-45607111)
chr7 (1-76)||(155965-156041)
chr7 (1-49)||(34992319-34992367)
[»] chr1 (23 HSPs)
chr1 (1-76)||(48872391-48872466)
chr1 (1-75)||(33422203-33422277)
chr1 (2-58)||(12717665-12717721)
chr1 (1-76)||(31427941-31428016)
chr1 (1-76)||(44112466-44112541)
chr1 (1-76)||(44641887-44641962)
chr1 (2-76)||(31184293-31184367)
chr1 (13-74)||(48261153-48261215)
chr1 (1-66)||(52417553-52417618)
chr1 (2-58)||(12708120-12708176)
chr1 (1-76)||(8464497-8464572)
chr1 (7-58)||(9445138-9445189)
chr1 (1-76)||(30439262-30439337)
chr1 (1-76)||(49425750-49425824)
chr1 (1-38)||(11038312-11038349)
chr1 (7-76)||(21728224-21728293)
chr1 (1-38)||(36794665-36794702)
chr1 (27-76)||(46907008-46907057)
chr1 (20-76)||(2362368-2362424)
chr1 (1-73)||(30530558-30530630)
chr1 (1-73)||(40610244-40610316)
chr1 (2-38)||(43757638-43757674)
chr1 (11-67)||(50118890-50118946)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-76)||(15518-15593)
[»] scaffold0148 (1 HSPs)
scaffold0148 (7-76)||(9465-9534)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-72)||(6833-6904)
[»] scaffold0508 (1 HSPs)
scaffold0508 (1-66)||(11520-11585)
[»] scaffold0504 (1 HSPs)
scaffold0504 (7-76)||(10725-10794)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 141 - 280
Target Start/End: Complemental strand, 17767878 - 17767725
Alignment:
Q  141 gccagcgtaaattccaactccaagagaaaactttgttaattcacttaggaggtctttaacaaatattat--------------gttggtggtttaacaat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||    
T  17767878 gccagcgtaaattccaactccaagagaaaactttgttaattcacttaggaggtctttaacaaatattatttaacaaatattatgttggtggtttaacaat 17767779  T
Q  227 tttattaaaaagaccaaactgtcccatctaattataaacaaattggcaagaaag 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17767778 tttattaaaaagaccaaactgtcccatctaattataaacaaattggcaagaaag 17767725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17768013 - 17767952
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcata 62  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17768013 gaagaaagagaataaaaacataatctgagtttgaaagatagggttgtcaaaaagttgtcata 17767952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 14803363 - 14803416
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtca 60  Q
    |||||||||||||||||| ||||||||||||| || ||||| ||||||||||||    
T  14803363 agagaataaaaacataatgtgagtatgaaagagagagttgttaaaaagttgtca 14803416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 2333448 - 2333377
Alignment:
Q  5 aaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||||| ||||| | ||||||||||| |  ||| |||||||||||| |||||||| ||||||||    
T  2333448 aaagagaataaaaatataatgtaagtatgaaagagaaagttatcaaaaagttgtaataaagtggttgtacaa 2333377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 15722487 - 15722562
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| | ||||||||||||||||||| ||| |||||||||||    
T  15722487 gaagagagagaataatactataatgtgagtatgagagagaaggttgtcaaaaagttgtcacaaaatgattgtacaa 15722562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3049514 - 3049589
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||||||| | ||| ||| |  ||||| |||||||||| | ||| |||||||||||    
T  3049514 gaagagagagaataaaaacataatctgaatgtgagagagaaagttgtgaaaaagttgttagaaaatgattgtacaa 3049589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 16337074 - 16337129
Alignment:
Q  21 taatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| ||||||||| ||| | ||| |||||||| ||||||||||||||||||||||    
T  16337074 taatgtgagtatgagagagaaggtagtcaaaaaattgtcataaagtgattgtacaa 16337129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30253297 - 30253372
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| || ||||| ||||||||| ||| |  ||||| ||||| |||| |||||||||||||||||    
T  30253297 gaagagagagaataagaatataatgtgagtatgagagagaaagttgttaaaaaattgtaataaagtgattgtacaa 30253372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32853128 - 32853203
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| |  ||||||| |||||||||| |||||||||||||||    
T  32853128 gaagagagagaataagagtataatgtgagtatgagagagaaagttgtcacaaagttgtcaaaaagtgattgtacaa 32853203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 21506422 - 21506348
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| ||||||||| || ||||| ||||||||| ||| |  |||||||||||||||||| ||| || ||||||||    
T  21506422 aagagagagaataagaagataatgtgagtatgagagagaaagttgtcaaaaagttgtcaaaaaatggttgtacaa 21506348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 29383638 - 29383569
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| |  ||||| ||||||||| ||| |  |||||||||||||||||| |||||| ||||||||    
T  29383638 agagaataagagtataatgtgagtatgagagagaaagttgtcaaaaagttgtcagaaagtggttgtacaa 29383569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23633307 - 23633379
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgta 73  Q
    ||||| ||||||||| || ||||| ||||||||| ||| |  |||||||||||||| | |||||||| |||||    
T  23633307 gaagagagagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagttataataaagtggttgta 23633379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30906647 - 30906719
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgta 73  Q
    ||||| ||||||||| |  ||||  ||||||||| |||||  |||||||||||||||||||||| ||| ||||    
T  30906647 gaagagagagaataagagtataacgtgagtatgagagataaagttgtcaaaaagttgtcataaaatgaatgta 30906719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6162035 - 6161960
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||| || ||||||||    
T  6162035 gaagagagagaataaaaacataatgtgagtatgaaagagagagttgtcaaaaggttgtcataaaatggttgtacaa 6161960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 43873678 - 43873750
Alignment:
Q  4 gaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||| ||| || ||||||||    
T  43873678 gaaagagaataaaaacataatgtgagtatgaaagagagagttgtcaaaaaattgtcacaaaatggttgtacaa 43873750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3756988 - 3756913
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||||||| |  |||||||||||||||| |||||||| ||||||||    
T  3756988 gaagagagagaataaaaatataatatgagtatgaaagagaaagttgtcaaaaagttgtaataaagtggttgtacaa 3756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39021427 - 39021502
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||||||| || |||||||||||||| ||| ||| || ||||||||    
T  39021427 gaagagagagaataaaaacataatgtgagtatgaaagagagagttgtcaaaaagttatcacaaaatggttgtacaa 39021502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2519992 - 2519937
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagtt 56  Q
    ||||| |||||||||||||||||| ||||||||||||| ||| ||||||| |||||    
T  2519992 gaagagagagaataaaaacataatgtgagtatgaaagagaggattgtcaagaagtt 2519937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7559405 - 7559330
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||| ||| |   ||||||| ||||||||| |||||| ||||||||    
T  7559405 gaagagagagaataaaaacataatgtgagtatgagagagaaaattgtcaagaagttgtcacaaagtggttgtacaa 7559330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22852823 - 22852898
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||| |||||||||||||| ||||||||| ||| |  |||||||| ||||||||| |||||| ||||||||    
T  22852823 gaagagagaaaataaaaacataatttgagtatgagagaaaaagttgtcaagaagttgtcacaaagtggttgtacaa 22852898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 26871091 - 26871058
Alignment:
Q  43 gttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||||||||||||||||||||||    
T  26871091 gttgtcaaaaagttgtcataaagtgattgtacaa 26871058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44086496 - 44086572
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaa-gttgtcataaagtgattgtacaa 76  Q
    ||||| || ||||||||||||||| | ||||||||| | || ||||||||||| ||||||||||| ||||| |||||    
T  44086496 gaagagagggaataaaaacataatgtaagtatgaaaaagagagttgtcaaaaaggttgtcataaaatgattttacaa 44086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7678819 - 7678744
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |   |||||| |||||||||| |||||| ||||||||    
T  7678819 gaagagagagaataaaaatataatgtgagtatgagagagaaaattgtcacaaagttgtcaaaaagtggttgtacaa 7678744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12490756 - 12490823
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtc-aaaaagttgtcataaagtg 67  Q
    ||||| |||||||||||||||||| ||||||||| ||| |  |||||| |||||||||||| ||||||    
T  12490756 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtctaaaaagttgtcacaaagtg 12490823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 21273694 - 21273769
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||| |||||||||||||| ||||||||| |||||   ||||||| ||||||||| ||| || ||||||||    
T  21273694 gaagagagataataaaaacataatgtgagtatgagagataaaattgtcaagaagttgtcacaaaatggttgtacaa 21273769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24946089 - 24946030
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtca 60  Q
    ||||| |||||||||||||||||| ||||||||| ||| |  |||||||| |||||||||    
T  24946089 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtcaagaagttgtca 24946030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27836267 - 27836192
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||| |  ||| | |||||||||||||    |||||||||||||||||| |||||| ||||||||    
T  27836267 gaagaaagagaataagagtatagtgtgagtatgaaagagtaagttgtcaaaaagttgtcacaaagtggttgtacaa 27836192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 41675353 - 41675428
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| | ||||||||| |||  ||||| ||||| || ||| ||| |||||||||||    
T  41675353 gaagagagagaataaaaacataatgtaagtatgaaaaataaagttgtaaaaaaattatcaaaaaatgattgtacaa 41675428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 41344654 - 41344728
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| ||||||||| |  ||||| ||||||||| ||| | ||||||||||||||| ||| ||| |||||||||||    
T  41344654 aagagagagaataagagtataatatgagtatgagagagaaggttgtcaaaaagttatcacaaactgattgtacaa 41344728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27776240 - 27776203
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaaga 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  27776240 gaagaaagataataaaaacataatgtgagtatgaaaga 27776203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 33415705 - 33415758
Alignment:
Q  11 aataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaa 64  Q
    |||||||| ||||| ||||||| ||||| || ||||||||| ||||||||||||    
T  33415705 aataaaaatataatgtgagtataaaagagagagttgtcaaagagttgtcataaa 33415758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 43403910 - 43403845
Alignment:
Q  9 agaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtac 74  Q
    ||||||| |||||||| | ||||||||||| || ||||||||||| ||||||| || || ||||||    
T  43403910 agaataagaacataatgtaagtatgaaagagagagttgtcaaaaaattgtcatcaaatggttgtac 43403845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6849245 - 6849317
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgta 73  Q
    ||||| ||||| ||| || ||||| |||||||||||||||  |||||| ||||||||||| ||| || |||||    
T  6849245 gaagagagagagtaagaatataatgtgagtatgaaagataaagttgtctaaaagttgtcacaaaatggttgta 6849317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 45101464 - 45101408
Alignment:
Q  20 ataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| ||| |  |||||||||||||||||| |||||| ||||||||    
T  45101464 ataatgtgagtatgagagagaaagttgtcaaaaagttgtcacaaagtggttgtacaa 45101408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41717537 - 41717474
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaa 64  Q
    ||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||    
T  41717537 gaagagagagaataaaaacataatgtgagtatgaaagagagagttgtcaaaaagttgtcataaa 41717474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43333654 - 43333729
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||| ||| |||||||    
T  43333654 gaagagagagaataaaaatataatgtgagtatgaaagagagagttgtcaaaaagttgtcataaaatgactgtacaa 43333729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44334785 - 44334860
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |  |||||||||||||||| |||||||| ||||||||    
T  44334785 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtggttgtacaa 44334860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 46315940 - 46316014
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| ||||||||| || ||||| ||||||||||||| | | || ||||||||||||||||||||| ||||||||    
T  46315940 aagagagagaataagaatataatgtgagtatgaaagagaagattatcaaaaagttgtcataaagtggttgtacaa 46316014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43900741 - 43900816
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| || ||||| ||||||||| ||| |  |||||||||||||||| |||||||| ||||||||    
T  43900741 gaagagagagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtggttgtacaa 43900816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 21217363 - 21217313
Alignment:
Q  26 tgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| ||||| ||||||||||||||| |||||||||| ||||||||    
T  21217363 tgagtatgagagataaggttgtcaaaaagttatcataaagtggttgtacaa 21217313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 22153945 - 22153876
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| || ||||| ||||||||| ||| |  |||||||||||| ||| |||||||||||||||||    
T  22153945 agagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagctgtaataaagtgattgtacaa 22153876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 30796604 - 30796669
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgt 72  Q
    |||||||||||||||||| ||||||||| ||| |  |||||||| ||||||||| |||||| ||||    
T  30796604 agagaataaaaacataatgtgagtatgagagaaaaagttgtcaagaagttgtcacaaagtggttgt 30796669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 35272095 - 35272039
Alignment:
Q  20 ataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||  |||||||||| ||||||| |||||| ||||||||    
T  35272095 ataatatgagtatgaaagataaagttgtcaaaaggttgtcacaaagtggttgtacaa 35272039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 35425666 - 35425730
Alignment:
Q  11 aataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtaca 75  Q
    ||||| || ||||| ||||||||| |||||  |||||||||||||||| |||||||| |||||||    
T  35425666 aataagaatataatgtgagtatgagagataaagttgtcaaaaagttgtaataaagtggttgtaca 35425730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41957602 - 41957554
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtca 49  Q
    ||||| |||||||||||||||||| |||||||||||||||  |||||||    
T  41957602 gaagagagagaataaaaacataatgtgagtatgaaagataaagttgtca 41957554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 51464275 - 51464331
Alignment:
Q  20 ataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |||||  |||||||||||||||||| |||||| ||||||||    
T  51464275 ataatgtgagtatgagagataaagttgtcaaaaagttgtcacaaagtggttgtacaa 51464331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 622452 - 622519
Alignment:
Q  9 agaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||| ||||| ||||||||| ||| |  |||||||||||||||| ||||| || ||||||||    
T  622452 agaataaaaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaa 622519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 49130941 - 49130878
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaa 64  Q
    ||||| ||||||||| |  ||||| ||||||||||||| | |||||||||||| ||||||||||    
T  49130941 gaagagagagaataagagtataatgtgagtatgaaagagaaggttgtcaaaaaattgtcataaa 49130878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 55467045 - 55466970
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| |||||||| |||| |  ||||||||||| || | ||||| || ||||||||    
T  55467045 gaagatagagaataaaaacataatgtgagtatgtaagagatagttgtcaaaaaattcttataaaatggttgtacaa 55466970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 18713689 - 18713615
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||  ||||||||||||  | ||||| || ||||||||    
T  18713689 aagaaagagaataaaaatataatgtgagtatgagagagagaattgtcaaaaagtattaataaaatggttgtacaa 18713615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1261359 - 1261396
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaaga 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  1261359 gaagagagagaataaaaacataatgtgagtatgaaaga 1261396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 28300638 - 28300707
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||  ||||| ||| ||||| ||| |  ||||| ||||||||||||||||||| ||||||||    
T  28300638 agagaataaaagtataatatgaatatgagagagaaagttgttaaaaagttgtcataaagtggttgtacaa 28300707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 34733281 - 34733350
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| ||||| ||||||||  | | |  |||||||||||||||||| |||||| ||||||||    
T  34733281 agagaataaaaatataatgtgagtatgtgaaagaaagttgtcaaaaagttgtcacaaagtggttgtacaa 34733350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 51672950 - 51672885
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagt 66  Q
    ||||| |||||||||||| ||||| ||||||||||| | |  |||||||||||||| ||| |||||    
T  51672950 gaagagagagaataaaaatataatgtgagtatgaaaaagaaagttgtcaaaaagttatcacaaagt 51672885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7294083 - 7294159
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtc-aaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||| ||| |  |||||| || ||||||||| ||||||  |||||||    
T  7294083 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtctaagaagttgtcacaaagtggatgtacaa 7294159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26279952 - 26279896
Alignment:
Q  20 ataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| ||| |  |||||||||||||||||| |||||| ||||||||    
T  26279952 ataatgtgagtatgagagagaaagttgtcaaaaagttgtcagaaagtggttgtacaa 26279896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 8897461 - 8897394
Alignment:
Q  9 agaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||||||| ||||||||||||| || |||||||||| ||||||||||| || ||||||||    
T  8897461 agaataaaaacataatgtgagtatgaaagagagagttgtcaaaaggttgtcataaaatggttgtacaa 8897394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12779590 - 12779665
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||| |||||  |||||||||||||||||| ||| || ||||||||    
T  12779590 gaagagagagaataaaaacataatgtgagtatgagagataaagttgtcaaaaagttgtcacaaattggttgtacaa 12779665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19127211 - 19127136
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||| ||| || |||||||| ||||||||| |||||| ||||||||    
T  19127211 gaagagagagaataaaaacataatgtgagtatgagagagagagttgtcaagaagttgtcacaaagtggttgtacaa 19127136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 36572772 - 36572719
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtca 60  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  36572772 agagaataaaaacataatgtgagtatgaaagagagagttgtcaaaaagttgtca 36572719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 3770996 - 3771064
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtaca 75  Q
    ||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||| ||| || |||||||    
T  3770996 agagaataagaacataatgtgagtatgagagagagggttgtcaaaaagttgtcacaaaatggttgtaca 3771064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12718364 - 12718439
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||| ||||| |||||  |||||||||||||||||| ||| || ||||||||    
T  12718364 gaagagagagaataaaaacataatgtgaatatgagagataaagttgtcaaaaagttgtcacaaattggttgtacaa 12718439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17063952 - 17063877
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||| |||||  |||||  ||||||||||| ||| |||||||||||    
T  17063952 gaagagagagaataaaaatataatgtgagtatgagagataaagttgtttaaaagttgtcaaaaaatgattgtacaa 17063877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39840693 - 39840768
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||| || ||||| ||||||||| ||| |   ||||||||||||||| |||||||| ||||||||    
T  39840693 gaagaaagagaataagaatataatgtgagtatgagagagaaatttgtcaaaaagttgtaataaagtggttgtacaa 39840768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 36713163 - 36713237
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| |||||||||||| ||||| ||||||||| ||| |  |||||||| ||||||||| |||||| ||||||||    
T  36713163 aagagagagaataaaaatataatgtgagtatgagagagaaagttgtcaagaagttgtcacaaagtggttgtacaa 36713237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1774267 - 1774332
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagt 66  Q
    ||||| |||||||||||||||||| ||||||||| ||| |  |||||||| ||||||||| |||||    
T  1774267 gaagagagagaataaaaacataatatgagtatgagagagaaagttgtcaagaagttgtcacaaagt 1774332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11767974 - 11768049
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||| ||  |  |||||||| ||||||||| ||||||  |||||||    
T  11767974 gaagagagagaataaaaacataatgtgagtatgagagggaaagttgtcaagaagttgtcacaaagtggatgtacaa 11768049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31024989 - 31025064
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||| || ||||| ||||||||| ||| |  ||||| ||||| ||||||||| ||| ||||||||    
T  31024989 gaagaaagagaataagaatataatgtgagtatgagagagaaagttgttaaaaaattgtcataatgtggttgtacaa 31025064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34381099 - 34381024
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| |  |||||||||||||||||| |||||| ||||||||    
T  34381099 gaagagagagaataagagaataatgtgagtatgagagagaaagttgtcaaaaagttgtcacaaagtggttgtacaa 34381024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 25364822 - 25364880
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtca 60  Q
    |||| |||||||  ||| ||||| |||||||||||||||  ||||||||||||||||||    
T  25364822 aagagagagaatggaaatataatgtgagtatgaaagataatgttgtcaaaaagttgtca 25364880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 40223770 - 40223844
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| ||||||||| |  ||||| ||||||||| ||| |  |||||||||||||||||| |||||| ||||||||    
T  40223770 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaaagttgtcacaaagtggttgtacaa 40223844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34698862 - 34698825
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaaga 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  34698862 gaagaaagagaataaaaacataaagtgagtatgaaaga 34698825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 4719726 - 4719662
Alignment:
Q  13 taaaaacataatctgagtatgaaagatagggttgtca-aaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| ||||||||| ||| | |||||||| ||||||||||| ||| || ||||||||    
T  4719726 taaaaacataatgtgagtatgagagaaaaggttgtcacaaaagttgtcaaaaattggttgtacaa 4719662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 11148587 - 11148523
Alignment:
Q  13 taaaaacataatctgagtatgaaagatagggttgtca-aaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| ||||||||| ||| |  ||||||| ||||||||||| ||| |||||||||||    
T  11148587 taaaaacataatgtgagtatgagagagaatgttgtcacaaaagttgtcaaaaattgattgtacaa 11148523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 34400686 - 34400630
Alignment:
Q  20 ataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| ||| | |||||| ||||| |||||||||| |||||||||||    
T  34400686 ataatgtgagtatgagagagaaggttgttaaaaaattgtcataaaatgattgtacaa 34400630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41460203 - 41460131
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgta 73  Q
    ||||| ||||||||| || ||||| ||||||||| |||||  |||||  ||||||||||| ||| ||||||||    
T  41460203 gaagagagagaataagaatataatgtgagtatgagagataaagttgtttaaaagttgtcaaaaaatgattgta 41460131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15596483 - 15596408
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||| ||| || |||||||| ||||||||| |||||| ||||||||    
T  15596483 gaagagagagaataaaaacataatgtgagtatgagagagagagttgtcaagaagttgtcacaaagtggttgtacaa 15596408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 25725679 - 25725753
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| |||||||||||||||||| ||||||||||||| |  |||||||||||||||| | |||||| ||||||||    
T  25725679 aagagagagaataaaaacataatgtgagtatgaaagagaaagttgtcaaaaagttgttagaaagtggttgtacaa 25725753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 38134061 - 38133992
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||| |||||| |||||| ||||||||| ||||||||||| |||||| |||||| ||||||||    
T  38134061 agagaataaaatcataatgtgagtacgaaagatagagttgtcaaaaaattgtcacaaagtggttgtacaa 38133992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11064073 - 11064148
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||| | |||||| ||||||||| ||| |  |||||||||||||||||| |||||| ||||||||    
T  11064073 gaagaaagagaataagagcataatgtgagtatgagagagaatgttgtcaaaaagttgtcacaaagtggttgtacaa 11064148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17363317 - 17363242
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| || ||||| ||||||||| ||| |  |||||||||||||||| |||||||||||||||||    
T  17363317 gaagagagagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtgattgtacaa 17363242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41609663 - 41609726
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaa 64  Q
    |||||||||||||||||||||||| ||||||||| |||||  |||||  |||||||||||||||    
T  41609663 gaagaaagagaataaaaacataatgtgagtatgagagataaagttgtacaaaagttgtcataaa 41609726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35661581 - 35661656
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||| ||||||||||||| ||||||||| ||| || |||||| |||| |||||||||| || ||||||||    
T  35661581 gaagagagaggataaaaacataatgtgagtatgagagaaagtgttgtctaaaaattgtcataaaatggttgtacaa 35661656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 1031841 - 1031767
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| |||||||||||||||||| ||||||||| ||| |  |||||||| ||||| ||| |||||| ||||||||    
T  1031841 aagagagagaataaaaacataatgtgagtatgagagagaaagttgtcaagaagttatcacaaagtggttgtacaa 1031767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 55927071 - 55927005
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtg 67  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| | ||||||||||||||||||||||||||    
T  55927071 gaagagagagaataagagtataatgtgagtatgagagagaaggttgtcaaaaagttgtcataaagtg 55927005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 11012222 - 11012153
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| ||||| | ||||||| |||||  ||||| |||||||||||||||| || ||||||||    
T  11012222 agagaataaaaatataatgtaagtatgagagataaagttgttaaaaagttgtcataaaatggttgtacaa 11012153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 51296215 - 51296248
Alignment:
Q  43 gttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||||||||||||||||||||||    
T  51296215 gttgtcaaaaagttgtcataaagtgattgtacaa 51296248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 38382191 - 38382123
Alignment:
Q  8 gagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||| || ||||  ||||||||| ||| | ||||||||||||||| |||||||||| ||||||||    
T  38382191 gagaataagaatataacgtgagtatgagagagaaggttgtcaaaaagttatcataaagtggttgtacaa 38382123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 12241139 - 12241088
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgt 58  Q
    |||||||||||||||||| ||||||||| ||| |  ||||||||||||||||    
T  12241139 agagaataaaaacataatgtgagtatgagagagaaagttgtcaaaaagttgt 12241088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24772758 - 24772695
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaa 64  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| | |||||||||||||||||||||||    
T  24772758 gaagagagagaataagagtataatgtgagtatgagagagaaggttgtcaaaaagttgtcataaa 24772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31147318 - 31147243
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||| ||||| ||| |  ||||||||||| |||| |||||||| ||||||||    
T  31147318 gaagagagagaataaaaatataatgtgattatgagagagaaagttgtcaaaaaattgtaataaagtggttgtacaa 31147243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 33820326 - 33820377
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgt 58  Q
    |||||||||||||||||| ||||||||| ||| |  ||||||||||||||||    
T  33820326 agagaataaaaacataatgtgagtatgagagagaaagttgtcaaaaagttgt 33820377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39881014 - 39881089
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| || ||||| ||||||||| ||| |  |||||||||||||||| | ||| |||||||||||    
T  39881014 gaagagagagaataagaagataatgtgagtatgagagagaaagttgtcaaaaagttgttagaaaatgattgtacaa 39881089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 46794485 - 46794560
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| |  |||||||||||||||||| |||||| ||||||||    
T  46794485 gaagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaaagttgtcagaaagtggttgtacaa 46794560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 25139940 - 25140014
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| |||||||||||| ||||| ||||||||| ||| |   |||||||||| |||| |||||||| ||||||||    
T  25139940 aagagagagaataaaaatataatttgagtatgagagagaaaattgtcaaaaaattgtaataaagtggttgtacaa 25140014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 29525944 - 29525870
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| ||||||||| || ||||||||||||||| ||| |  ||| |||||||||||| ||||| || ||||||||    
T  29525944 aagagagagaataagaatataatctgagtatgagagagaaagttatcaaaaagttgtaataaaatggttgtacaa 29525870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 34616412 - 34616362
Alignment:
Q  26 tgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| ||| | ||||||||||||||| |||||||||| ||||||||    
T  34616412 tgagtatgagagagaaggttgtcaaaaagttatcataaagtggttgtacaa 34616362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 48402349 - 48402399
Alignment:
Q  26 tgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| ||| | ||||||||||||||| |||||||||| ||||||||    
T  48402349 tgagtatgagagagaaggttgtcaaaaagttatcataaagtggttgtacaa 48402399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 56364269 - 56364319
Alignment:
Q  26 tgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| ||| | ||||||||||||||| |||||||||| ||||||||    
T  56364269 tgagtatgagagagaaggttgtcaaaaagttatcataaagtggttgtacaa 56364319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 29384187 - 29384256
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||  ||||| ||||||| | ||| |  ||||| ||||| ||||||||||||||||||||||    
T  29384187 agagaataaaagtataatgtgagtataagagagaaagttgttaaaaaattgtcataaagtgattgtacaa 29384256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48722156 - 48722099
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgt 58  Q
    ||||| |||||||||||||||||| ||||||||| ||| |   |||||||||||||||    
T  48722156 gaagagagagaataaaaacataatgtgagtatgagagagaaaattgtcaaaaagttgt 48722099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 52392228 - 52392284
Alignment:
Q  20 ataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |||||  |||||||||||||||||| ||||||  |||||||    
T  52392228 ataatgtgagtatgagagataaagttgtcaaaaagttgtcacaaagtggatgtacaa 52392284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 42665799 - 42665871
Alignment:
Q  4 gaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| || ||||| ||||||||| ||| |  |||||||||||||||| |||||||||||||||||    
T  42665799 gaaagagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtgattgtacaa 42665871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10749663 - 10749738
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||||||| ||  |||||||||  |||||||||| || ||||||||    
T  10749663 gaagagagagaataaaaacataatgtgagtatgaaagagagaattgtcaaaagattgtcataaaatggttgtacaa 10749738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 546369 - 546444
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |  ||||| |||||||||| |||||||| ||||||||    
T  546369 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgttaaaaagttgtaataaagtggttgtacaa 546444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 44050102 - 44050027
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtca-aaaagttgtcataaagtgattgtacaa 76  Q
    |||||||| | |||||||||||| ||||||||| ||| | |||||||| ||||||||||||||| || ||||||||    
T  44050102 aagaaagaaagtaaaaacataatgtgagtatgagagagaaggttgtcacaaaagttgtcataaaatggttgtacaa 44050027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 7497981 - 7498050
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| ||||| ||||||||| ||| |  |||||||||||||||| ||||| || ||||||||    
T  7497981 agagaataaaaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaa 7498050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 18373924 - 18373859
Alignment:
Q  11 aataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||| ||||| ||||||||||| |  | |||||||||| ||||||||||| |||||||||||    
T  18373924 aataaaaatataatgtgagtatgaaacaatgagttgtcaaaatgttgtcataaaatgattgtacaa 18373859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 43650539 - 43650608
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| ||||| ||| ||||| ||| |  ||||||||||||||||  ||||||||||||||||    
T  43650539 agagaataaaaatataatatgaatatgagagagaaagttgtcaaaaagttgtattaaagtgattgtacaa 43650608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2013269 - 2013344
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||| ||||||| |  ||||| |||||| |||||| | |||||||||||| |||||||||| ||| |||||||    
T  2013269 gaagaaatagaataagagtataatgtgagtacgaaagagaaggttgtcaaaaaattgtcataaaatgaatgtacaa 2013344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11229305 - 11229380
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| || ||||||||||||||| ||||||||| ||| |  |||||||| ||||||||| ||||||  |||||||    
T  11229305 gaagagagggaataaaaacataatgtgagtatgagagagaaagttgtcaagaagttgtcacaaagtggatgtacaa 11229380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22390239 - 22390164
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |  ||||| | ||||||| ||| |  |||||||||||||||||||| |||||||||||||    
T  22390239 gaagagagagaataagagtataatgtaagtatgagagagaatgttgtcaaaaagttgtcatagagtgattgtacaa 22390164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23344973 - 23345048
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||  ||||| ||| ||||| ||| | ||||||||||||||||| ||||| ||| |||||||    
T  23344973 gaagagagagaataaaagtataatgtgaatatgagagagaaggttgtcaaaaagttgttataaaatgaatgtacaa 23345048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 30339865 - 30339928
Alignment:
Q  13 taaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||| ||| ||||||||||| |||  |||||||||||||| ||| ||| |||||||||||    
T  30339865 taaaaacaaaatgtgagtatgaaatataaagttgtcaaaaagttatcaaaaaatgattgtacaa 30339928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 35965654 - 35965587
Alignment:
Q  9 agaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||| || ||||| ||||||||||||| |  ||||||||||| |||| |||||||| ||||||||    
T  35965654 agaataagaatataatgtgagtatgaaagagaaagttgtcaaaaaattgtaataaagtggttgtacaa 35965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42251904 - 42251979
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||| ||||| ||| |  ||| ||||||||||||  ||||||||||||||||    
T  42251904 gaagagagagaataaaaatataatgtgaatatgagagagaaagttatcaaaaagttgtactaaagtgattgtacaa 42251979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 25270799 - 25270849
Alignment:
Q  26 tgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| ||| | ||||||||||||||| |||||||||| ||||||||    
T  25270799 tgagtatgagagagaaggttgtcaaaaagttatcataaagtggttgtacaa 25270849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11728105 - 11728142
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaaga 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  11728105 gaagagagagaataaaaacataatgtgagtatgaaaga 11728142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 36816410 - 36816463
Alignment:
Q  11 aataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaa 64  Q
    |||||||||||||| ||| ||||||||| || ||||||||||| || |||||||    
T  36816410 aataaaaacataatgtgaatatgaaagagagagttgtcaaaaaattatcataaa 36816463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 43356370 - 43356301
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||  |||| ||||||||| |||||  |||||||||||||||| | ||| || ||||||||    
T  43356370 agagaataaaaatgtaatgtgagtatgagagataaagttgtcaaaaagttgttagaaattggttgtacaa 43356301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 4842523 - 4842579
Alignment:
Q  20 ataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| ||| |  |||||| ||||||||||| |||||||||||||||    
T  4842523 ataatgtgagtatgagagagaaagttgtctaaaagttgtcacaaagtgattgtacaa 4842579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 38096431 - 38096498
Alignment:
Q  9 agaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||||||| ||||||||||||| || ||||||||||| |||||| ||| || ||||||||    
T  38096431 agaataaaaacataatatgagtatgaaagagagagttgtcaaaaaattgtcacaaaatggttgtacaa 38096498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 44216130 - 44216183
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtca 60  Q
    |||||||||||||||||| ||||||||||| | || ||||||||||||||||||    
T  44216130 agagaataaaaacataatgtgagtatgaaatagagagttgtcaaaaagttgtca 44216183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17500784 - 17500709
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| || ||||| ||||||||| |||||  |||||||||||||| | |||||||| ||||||||    
T  17500784 gaagagagagaataagaatataatgtgagtatgagagataaagttgtcaaaaagttataataaagtggttgtacaa 17500709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 17552430 - 17552505
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| || ||||| ||||||||| |||||  |||||||||||||| | |||||||| ||||||||    
T  17552430 gaagagagagaataagaatataatgtgagtatgagagataaagttgtcaaaaagttataataaagtggttgtacaa 17552505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 21752745 - 21752670
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |  ||||| ||||||||| |||||  |||||||||||||||| | |||||||||||||||    
T  21752745 gaagagagagaataagagaataatgtgagtatgagagataaagttgtcaaaaagttgtgagaaagtgattgtacaa 21752670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 31364869 - 31364943
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||||||||| ||||| ||||||||||||| |   |||||||||| |||| |||||||| | ||||||    
T  31364869 aagaaagagaataaaaatataatgtgagtatgaaagagaaaattgtcaaaaaattgtaataaagtggtcgtacaa 31364943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 41966409 - 41966344
Alignment:
Q  11 aataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||||| ||||||||||| | |  ||||||||||| |||||| |||||| ||||||||    
T  41966409 aataaaaacataatatgagtatgaaatagaaagttgtcaaaaaattgtcacaaagtggttgtacaa 41966344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42640930 - 42640873
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgt 58  Q
    |||||||||||||||||| ||||| |||||||| |||| |  ||||||||||||||||    
T  42640930 gaagaaagagaataaaaagataatgtgagtatgtaagagaaagttgtcaaaaagttgt 42640873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 42663165 - 42663112
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtca 60  Q
    |||||||||||||||||| | ||||||||| | || ||||||||||||||||||    
T  42663165 agagaataaaaacataatgtaagtatgaaatagagagttgtcaaaaagttgtca 42663112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 43107691 - 43107622
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||| ||||| ||||||||| |||||  |||||| |||||||||||| |||||||| |||||    
T  43107691 agagagtaaaaatataatgtgagtatgagagataaagttgtctaaaagttgtcatgaagtgattttacaa 43107622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 30769651 - 30769702
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgt 58  Q
    |||||||||| ||||||| ||||||||| |||||  ||||||||||||||||    
T  30769651 agagaataaatacataatgtgagtatgagagataaagttgtcaaaaagttgt 30769702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47644792 - 47644717
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |  ||||||||||| || | |||||||| ||||||||    
T  47644792 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcaaaaaattataataaagtggttgtacaa 47644717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 5978666 - 5978592
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtaca 75  Q
    ||||| |||||||| ||  ||||| ||||||||||||| |   |||| |||||||||||||||| ||||||||||    
T  5978666 gaagagagagaatacaagtataatgtgagtatgaaagagaaaattgttaaaaagttgtcataaaatgattgtaca 5978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 7701385 - 7701335
Alignment:
Q  26 tgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| ||| | ||||||||||||||| |||||||||| ||||||||    
T  7701385 tgagtatgagagagaaggttgtcaaaaagttatcataaagtggttgtacaa 7701335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 46022491 - 46022541
Alignment:
Q  26 tgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| ||| |  ||||||||||||||||||||||||| ||||||||    
T  46022491 tgagtatgagagagaatgttgtcaaaaagttgtcataaagtggttgtacaa 46022541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 28110038 - 28109969
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| ||||| ||||||||  |||||  |||||  ||||||||||| |||||| ||||||||    
T  28110038 agagaataaaaatataatgtgagtatgtgagataaagttgtttaaaagttgtcaaaaagtggttgtacaa 28109969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 33212123 - 33212054
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||| ||||| ||||||||| |||||  ||||||||||| |||| | ||| || ||||||||    
T  33212123 agagaataaaaagataatgtgagtatgagagataaagttgtcaaaaaattgttagaaaatggttgtacaa 33212054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 45607111 - 45607046
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagt 66  Q
    ||||| || ||||||||||||||| ||||||||| ||| |  |||||||| ||||||||| |||||    
T  45607111 gaagagagtgaataaaaacataatgtgagtatgagagagaaagttgtcaagaagttgtcacaaagt 45607046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 155965 - 156041
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtc-aaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||||||| ||| |  |||||| || ||||||||| ||||||  |||||||    
T  155965 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtctaagaagttgtcacaaagtggatgtacaa 156041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34992319 - 34992367
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtca 49  Q
    ||||| |||||||||||||||||| | ||||||||||| || |||||||    
T  34992319 gaagagagagaataaaaacataatgtaagtatgaaagagagagttgtca 34992367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48872466 - 48872391
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||||| |||||| || || ||||||||| ||| | ||||||| |||||||||||||||||| ||||||||    
T  48872466 gaagaaagagagtaaaaatatgatgtgagtatgagagagaaggttgtctaaaagttgtcataaagtggttgtacaa 48872391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33422203 - 33422277
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtaca 75  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |  |||||||||||||||| |||||||| |||||||    
T  33422203 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtggttgtaca 33422277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 12717721 - 12717665
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgt 58  Q
    ||||||||||||||||||||||| ||||||||||||| |   |||||||||||||||    
T  12717721 aagaaagagaataaaaacataatgtgagtatgaaagagaaaattgtcaaaaagttgt 12717665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31427941 - 31428016
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||||||||| ||||||||| ||||||||| ||| |  |||||||| || |||||| |||||| ||||||||    
T  31427941 gaagaaagagaatagaaacataatgtgagtatgatagagaaagttgtcaagaaattgtcacaaagtggttgtacaa 31428016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44112541 - 44112466
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |  ||||||||||| |||| |||||||| ||||||||    
T  44112541 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcaaaaaattgtaataaagtggttgtacaa 44112466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44641887 - 44641962
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |  ||||||||||| |||| |||||||| ||||||||    
T  44641887 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcaaaaaattgtaataaagtggttgtacaa 44641962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 31184367 - 31184293
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||| |||||||||||| ||||| |||| |||| |||||  ||||| |||||||||||||||| || ||||||||    
T  31184367 aagagagagaataaaaatataatttgagcatgagagataaagttgttaaaaagttgtcataaaatggttgtacaa 31184293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 48261215 - 48261153
Alignment:
Q  13 taaaaacataatctgagtatgaaagatagggttgtca-aaaagttgtcataaagtgattgtac 74  Q
    |||||||||||| ||||||||||| ||| |||||||| ||||||||||| |||||| ||||||    
T  48261215 taaaaacataatgtgagtatgaaaaataaggttgtcacaaaagttgtcaaaaagtggttgtac 48261153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 52417618 - 52417553
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagt 66  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |  |||||||||||||||| |||||||    
T  52417618 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagt 52417553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 12708176 - 12708120
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgt 58  Q
    ||||||||||||||||||||||| ||| ||||||||| |   |||||||||||||||    
T  12708176 aagaaagagaataaaaacataatgtgattatgaaagagaaaattgtcaaaaagttgt 12708120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8464497 - 8464572
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| || ||||| ||||||||| ||| |   ||||||||||||||| |||||||| ||||||||    
T  8464497 gaagagagagaataagaatataatgtgagtatgagagagaaaattgtcaaaaagttgtaataaagtggttgtacaa 8464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 9445189 - 9445138
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgt 58  Q
    ||||||| |||||||||| ||||||||||||| |  ||||||||||||||||    
T  9445189 agagaatgaaaacataatgtgagtatgaaagagaaagttgtcaaaaagttgt 9445138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30439337 - 30439262
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||| |||||||  ||||| ||||||||| |||||  ||||||||||| |||||||||| || ||||||||    
T  30439337 gaagagagaaaataaaaggataatgtgagtatgagagataaagttgtcaaaaaattgtcataaattggttgtacaa 30439262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 49425824 - 49425750
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| || ||||| ||||||||| |||||  |||||||||| ||||||| |||||| ||||||||    
T  49425824 gaagagagagaataagaaaataatgtgagtatgagagataaagttgtcaaaa-gttgtcacaaagtggttgtacaa 49425750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11038349 - 11038312
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaaga 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  11038349 gaagagagagaataaaaacataatgtgagtatgaaaga 11038312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 21728224 - 21728293
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| || ||||| ||||||||| ||| |  |||||||||||||||| | ||| |||||||||||    
T  21728224 agagaataagaagataatatgagtatgagagagaaagttgtcaaaaagttgttagaaaatgattgtacaa 21728293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36794702 - 36794665
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaaga 38  Q
    ||||||||||||||| || |||||||||||||||||||    
T  36794702 gaagaaagagaataagaatataatctgagtatgaaaga 36794665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 46907057 - 46907008
Alignment:
Q  27 gagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    |||||||| ||| | ||||||||||||||| |||||||||| ||||||||    
T  46907057 gagtatgagagagaaggttgtcaaaaagttatcataaagtggttgtacaa 46907008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 2362424 - 2362368
Alignment:
Q  20 ataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| ||||||||| |||||  ||||||| |||||| ||| |||||||||||||||    
T  2362424 ataatatgagtatgagagataaagttgtcacaaagttatcaaaaagtgattgtacaa 2362368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30530558 - 30530630
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgta 73  Q
    ||||| |||||||||||| ||||| ||||||||| ||| |  |||||| ||||||||||| ||| || |||||    
T  30530558 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgtctaaaagttgtcacaaaatggttgta 30530630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 40610316 - 40610244
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgta 73  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| | |||||||||||| |||||||||| ||| ||||    
T  40610316 gaagagagagaataagagtataatgtgagtatgagagagaaggttgtcaaaaaattgtcataaaatgaatgta 40610244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 43757674 - 43757638
Alignment:
Q  2 aagaaagagaataaaaacataatctgagtatgaaaga 38  Q
    |||| |||||||||||||||||| |||||||||||||    
T  43757674 aagagagagaataaaaacataatgtgagtatgaaaga 43757638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 50118890 - 50118946
Alignment:
Q  11 aataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtg 67  Q
    |||||||| ||||| ||| ||||| |||||  |||||||||||||||| ||||||||    
T  50118890 aataaaaatataatgtgaatatgagagataaagttgtcaaaaagttgtaataaagtg 50118946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 15518 - 15593
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||| |||||||||||||||||| ||||| ||| ||| |   ||||||||||||||||| |||||| ||||||||    
T  15518 gaagagagagaataaaaacataatgtgagtttgagagagaaaattgtcaaaaagttgtcacaaagtggttgtacaa 15593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 9534 - 9465
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||| | |||||||  ||||||||| ||| ||||||||||| || ||||||||||||| ||||||||    
T  9534 agagaattagaacataacgtgagtatgagagagagggttgtcaacaaattgtcataaagtggttgtacaa 9465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6904 - 6833
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgt 72  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| |  |||||||||||||||||||||| |||||||    
T  6904 gaagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaaagttgtcataaattgattgt 6833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11520 - 11585
Alignment:
Q  1 gaagaaagagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagt 66  Q
    ||||| |||||||||||||||||| ||||||||| ||| |   ||||||| ||||||||| |||||    
T  11520 gaagagagagaataaaaacataatgtgagtatgagagagaaaattgtcaagaagttgtcacaaagt 11585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 10725 - 10794
Alignment:
Q  7 agagaataaaaacataatctgagtatgaaagatagggttgtcaaaaagttgtcataaagtgattgtacaa 76  Q
    ||||||||| || ||||| ||||||||| ||| |  ||||||||||| |||| |||||||| ||||||||    
T  10725 agagaataagaatataatgtgagtatgagagaaaaagttgtcaaaaaattgtaataaagtggttgtacaa 10794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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