View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_41 (Length: 254)
Name: NF10539_low_41
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28671429 - 28671190
Alignment:
| Q |
1 |
ttgttttgattaataaatgacctacttgtttgattcaaacttaatagttttttgtgacttnnnnnnntataattttgtcaataggttgattgtgagacac |
100 |
Q |
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| T |
28671429 |
ttgttttgattaataaatgacctacttgtttgattcaaacttaatagttttttgtgacttaaaaaaatataattttgtcaataggttgattgtgagacac |
28671330 |
T |
|
| Q |
101 |
cagctaataaggacaacnnnnnnntaaaagcttctagttagttgctttattaaatccaagttatatcaatagtttagttgtcctatagaaacgttgatcg |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28671329 |
cagctaataaggacaacaaaaaaataaaagcttctagttagttgctttattaaatccaagttatatcaatagtttagttgtcctatagaaacgtttatcg |
28671230 |
T |
|
| Q |
201 |
ctactcttttcccttcattaattcctcttcaacccctttg |
240 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
28671229 |
ctactcttttccattcattaattcctcttcaacccctttg |
28671190 |
T |
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