View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_42 (Length: 251)

Name: NF10539_low_42
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_42
NF10539_low_42
[»] chr2 (14 HSPs)
chr2 (1-136)||(32806808-32806943)
chr2 (1-136)||(32309077-32309212)
chr2 (1-136)||(32565623-32565758)
chr2 (1-136)||(32799854-32799989)
chr2 (1-136)||(32815245-32815380)
chr2 (46-136)||(28215852-28215942)
chr2 (167-236)||(32308985-32309054)
chr2 (167-236)||(32800012-32800081)
chr2 (167-236)||(32565789-32565858)
chr2 (167-225)||(32815411-32815469)
chr2 (167-209)||(32305293-32305335)
chr2 (167-200)||(32806974-32807007)
chr2 (98-130)||(28216008-28216040)
chr2 (103-136)||(28220194-28220227)
[»] chr6 (2 HSPs)
chr6 (1-136)||(301231-301366)
chr6 (167-209)||(301166-301208)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 32806808 - 32806943
Alignment:
Q  1 ttgtttgtgttatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgg 100  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32806808 ttgtttgtgttatggtgttttctggttcagattctcctcttgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgg 32806907  T
Q  101 gttgaagatgaagaatctcctcattttcttgatgat 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  32806908 gttgaagatgaagaatctcctcattttcttgatgat 32806943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 32309212 - 32309077
Alignment:
Q  1 ttgtttgtgttatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgg 100  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  32309212 ttgtttgtgttatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgg 32309113  T
Q  101 gttgaagatgaagaatctcctcattttcttgatgat 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  32309112 gttgaagatgaagaatctcctcattttcttgatgat 32309077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 32565623 - 32565758
Alignment:
Q  1 ttgtttgtgttatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgg 100  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  32565623 ttgtttgtgttatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgg 32565722  T
Q  101 gttgaagatgaagaatctcctcattttcttgatgat 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  32565723 gttgaagatgaagaatctcctcattttcttgatgat 32565758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 32799854 - 32799989
Alignment:
Q  1 ttgtttgtgttatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgg 100  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  32799854 ttgtttgtgttatggtgttttctggttcaggttctcctcttgggtttctgagagagagaagaacaggaaggaatacaatgaatgcaactatgaaccatgg 32799953  T
Q  101 gttgaagatgaagaatctcctcattttcttgatgat 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  32799954 gttgaagatgaagaatctcctcattttcttgatgat 32799989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 32815245 - 32815380
Alignment:
Q  1 ttgtttgtgttatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgg 100  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  32815245 ttgtttgtgttatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgg 32815344  T
Q  101 gttgaagatgaagaatctcctcattttcttgatgat 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  32815345 gttgaagatgaagaatctcctcattttcttgatgat 32815380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 28215852 - 28215942
Alignment:
Q  46 ttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttcttgatgat 136  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  28215852 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttcttgatgat 28215942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 32309054 - 32308985
Alignment:
Q  167 cttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32309054 cttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattg 32308985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 32800012 - 32800081
Alignment:
Q  167 cttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32800012 cttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattg 32800081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 32565789 - 32565858
Alignment:
Q  167 cttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  32565789 cttgtttaggaagttattgagttggttggaattgtaactgaatctgaatggtttgttagcatattgattg 32565858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 32815411 - 32815469
Alignment:
Q  167 cttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttag 225  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  32815411 cttgtttaggaagttattgggttggttggaattgtaactgaatctgaatggttggttag 32815469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 32305335 - 32305293
Alignment:
Q  167 cttgtttaggaagttattgagttggttggaattgtaactgaat 209  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  32305335 cttgtttaggaagttattgggtttgttggaattgtaactgaat 32305293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 32806974 - 32807007
Alignment:
Q  167 cttgtttaggaagttattgagttggttggaattg 200  Q
    ||||||||||||||||||||||||||||||||||    
T  32806974 cttgtttaggaagttattgagttggttggaattg 32807007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 28216008 - 28216040
Alignment:
Q  98 tgggttgaagatgaagaatctcctcattttctt 130  Q
    |||||||||||||||||||||||||||||||||    
T  28216008 tgggttgaagatgaagaatctcctcattttctt 28216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 28220227 - 28220194
Alignment:
Q  103 tgaagatgaagaatctcctcattttcttgatgat 136  Q
    |||||||||||| |||||||||||||||||||||    
T  28220227 tgaagatgaagattctcctcattttcttgatgat 28220194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 301366 - 301231
Alignment:
Q  1 ttgtttgtgttatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgg 100  Q
    |||||||||||||||||||||| ||||| | |||||||  ||||||||||| |||| ||||||| ||||||| |||||||||||||||||||| ||||||    
T  301366 ttgtttgtgttatggtgttttcgggttctgattctcctcgtgggtttctgaaagagagaagaacgggaaggactacaatgaatgcaactatgaaccatgg 301267  T
Q  101 gttgaagatgaagaatctcctcattttcttgatgat 136  Q
    |||||||||||||||||| |||||||||||||||||    
T  301266 gttgaagatgaagaatcttctcattttcttgatgat 301231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 301208 - 301166
Alignment:
Q  167 cttgtttaggaagttattgagttggttggaattgtaactgaat 209  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  301208 cttgtttaggaagttattgggtttgttggaattgtaactgaat 301166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University