View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_43 (Length: 250)
Name: NF10539_low_43
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 6483232 - 6483143
Alignment:
| Q |
107 |
tcattttcctccatgaaacatcccttggttataacgcaagttcaatggcatcgtgaatgttgttgaaccagtgcatctattgaaagcata |
196 |
Q |
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| T |
6483232 |
tcatattcctccacaaatcatcccatggttatgacgcaagttcaatgataatgtgaatgttgttgaaccagagcatctattgaaagcata |
6483143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 6800907 - 6800855
Alignment:
| Q |
53 |
gatacggcaacggatattgtaagcagtgatactgcaatcataacaccaagtct |
105 |
Q |
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| T |
6800907 |
gatatggcaaaggaaattgtaagcagtgatactgcaatcataacaccaagtct |
6800855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 6800825 - 6800737
Alignment:
| Q |
107 |
tcattttcctccatgaaacatcccttggttataacgcaagttcaatggcatcgtgaatgttgttgaaccagtgcatctattgaaagcat |
195 |
Q |
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| T |
6800825 |
tcatattccaccaggaatcatcccatggttatgatgcaagttcaacgataatgtgaatgttgttgaaccagagcatctattgaaagcat |
6800737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6483317 - 6483268
Alignment:
| Q |
1 |
ttatcaaaagccttccat-ttatgattaaactgcacagcctttcatattt |
49 |
Q |
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| T |
6483317 |
ttatcaaaagccttccatattatggttaaactgcacagcatttcatattt |
6483268 |
T |
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