View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_44 (Length: 250)
Name: NF10539_low_44
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3745233 - 3745471
Alignment:
| Q |
1 |
aaaatgatatttttcaatgttagagatgtggtgaattggagtatttaaacggtgagaatgaagnnnnnnnnctagaaggttcaggagaaatggaacggaa |
100 |
Q |
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| T |
3745233 |
aaaatgatatttttcaatgttagagatgtggtgaattggagtatttaaacggtgagaatgaagaaaaaaa-ctagaaggttcaggagaaatggaacggaa |
3745331 |
T |
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| Q |
101 |
acacagtagggacatttgaaagttctagtagtttcgagtttagaagaacacgtggttctcttaacattccttatttagagttctttctatttctttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745332 |
acacagtagggacatttgaaagttctagtagtttcgagtttagaagaacacgtggttctcttaacattccttatttagagttctttctatttctttcttg |
3745431 |
T |
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| Q |
201 |
taccttctagagtcgtttgacttttggtcaatcctctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3745432 |
taccttctagagtcgtttgacttttggtcaatcctctctg |
3745471 |
T |
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