View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_46 (Length: 250)

Name: NF10539_low_46
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_46
NF10539_low_46
[»] chr4 (29 HSPs)
chr4 (60-169)||(2330490-2330596)
chr4 (85-141)||(7148750-7148807)
chr4 (86-141)||(28663407-28663463)
chr4 (89-127)||(36740886-36740924)
chr4 (88-141)||(52274171-52274225)
chr4 (89-141)||(488435-488488)
chr4 (86-141)||(54412098-54412154)
chr4 (80-127)||(34633513-34633560)
chr4 (87-141)||(39932805-39932860)
chr4 (88-127)||(43136683-43136722)
chr4 (83-126)||(48238055-48238098)
chr4 (1-39)||(2330610-2330648)
chr4 (80-141)||(28074338-28074400)
chr4 (89-119)||(35124355-35124385)
chr4 (89-119)||(35405653-35405683)
chr4 (86-119)||(3564185-3564218)
chr4 (87-116)||(3564354-3564383)
chr4 (86-119)||(9153670-9153703)
chr4 (83-116)||(21216392-21216425)
chr4 (89-118)||(22273761-22273790)
chr4 (82-115)||(38345727-38345760)
chr4 (86-119)||(38345909-38345942)
chr4 (86-119)||(52700631-52700664)
chr4 (85-136)||(825795-825847)
chr4 (88-116)||(948223-948251)
chr4 (83-119)||(1374451-1374487)
chr4 (87-119)||(12022987-12023019)
chr4 (87-119)||(32628747-32628779)
chr4 (194-238)||(36498654-36498698)
[»] chr5 (14 HSPs)
chr5 (87-141)||(1942990-1943045)
chr5 (74-166)||(42706763-42706862)
chr5 (80-127)||(28625453-28625500)
chr5 (87-141)||(40696981-40697036)
chr5 (84-132)||(41419619-41419667)
chr5 (88-119)||(1372081-1372112)
chr5 (80-141)||(6125260-6125322)
chr5 (85-119)||(11163357-11163391)
chr5 (81-119)||(28970166-28970204)
chr5 (82-119)||(3520590-3520627)
chr5 (93-141)||(10274260-10274309)
chr5 (86-119)||(31637164-31637197)
chr5 (80-116)||(1576779-1576815)
chr5 (80-116)||(1608000-1608036)
[»] chr1 (15 HSPs)
chr1 (87-165)||(28870204-28870283)
chr1 (82-127)||(45267440-45267485)
chr1 (86-127)||(36178515-36178556)
chr1 (93-138)||(38781059-38781104)
chr1 (85-116)||(7145207-7145238)
chr1 (184-226)||(7537050-7537092)
chr1 (89-119)||(26946193-26946223)
chr1 (81-119)||(26988117-26988155)
chr1 (86-119)||(16225474-16225507)
chr1 (80-125)||(48819272-48819317)
chr1 (188-233)||(49315794-49315839)
chr1 (88-116)||(994622-994650)
chr1 (88-116)||(26946014-26946042)
chr1 (88-116)||(26988296-26988324)
chr1 (87-127)||(37431146-37431186)
[»] chr2 (10 HSPs)
chr2 (85-136)||(9140651-9140703)
chr2 (85-119)||(38215987-38216021)
chr2 (86-127)||(17317158-17317199)
chr2 (85-125)||(18276909-18276949)
chr2 (80-112)||(29774897-29774929)
chr2 (89-139)||(37419899-37419950)
chr2 (197-239)||(14818703-14818745)
chr2 (95-132)||(35997287-35997324)
chr2 (203-239)||(1208617-1208653)
chr2 (87-119)||(12223981-12224013)
[»] scaffold0015 (1 HSPs)
scaffold0015 (86-141)||(48823-48878)
[»] chr8 (12 HSPs)
chr8 (80-119)||(32131399-32131438)
chr8 (88-141)||(34286614-34286668)
chr8 (84-136)||(9130937-9130990)
chr8 (85-141)||(28879036-28879093)
chr8 (88-127)||(9781196-9781235)
chr8 (85-116)||(11460796-11460827)
chr8 (85-124)||(18396914-18396953)
chr8 (86-119)||(2019737-2019770)
chr8 (93-141)||(32213073-32213122)
chr8 (88-116)||(11460851-11460879)
chr8 (86-118)||(19925477-19925509)
chr8 (85-125)||(35168359-35168399)
[»] chr7 (12 HSPs)
chr7 (88-141)||(47511024-47511078)
chr7 (81-141)||(29378619-29378680)
chr7 (87-119)||(30181516-30181548)
chr7 (89-132)||(29778433-29778476)
chr7 (88-119)||(38372525-38372556)
chr7 (81-119)||(22515595-22515633)
chr7 (83-141)||(14691350-14691409)
chr7 (93-141)||(33288150-33288199)
chr7 (84-116)||(1053974-1054006)
chr7 (86-141)||(1054119-1054175)
chr7 (88-116)||(23119850-23119878)
chr7 (88-116)||(29390461-29390489)
[»] chr6 (5 HSPs)
chr6 (85-141)||(2034280-2034337)
chr6 (172-239)||(6793464-6793531)
chr6 (85-119)||(11795524-11795558)
chr6 (85-141)||(21025278-21025335)
chr6 (88-116)||(25430854-25430882)
[»] scaffold0071 (1 HSPs)
scaffold0071 (85-120)||(18101-18136)
[»] chr3 (9 HSPs)
chr3 (85-120)||(15444055-15444090)
chr3 (88-119)||(29270328-29270359)
chr3 (88-119)||(34707801-34707832)
chr3 (89-128)||(37601092-37601131)
chr3 (84-141)||(45331346-45331404)
chr3 (98-132)||(52421070-52421104)
chr3 (87-128)||(35480447-35480488)
chr3 (87-119)||(10272088-10272120)
chr3 (88-116)||(35480312-35480340)
[»] scaffold0022 (1 HSPs)
scaffold0022 (84-133)||(89313-89362)
[»] scaffold0024 (1 HSPs)
scaffold0024 (87-119)||(97115-97147)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 2330596 - 2330490
Alignment:
Q  60 aaatgtgtcactttttgacctaggacccgtttggattgacttatttttgagcttatgcaagtaaataaattt-tatgtattatatttgtcaaggtagttt 158  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||| |||||    |||||||||||||| ||||||||||||||||||| |||||||    
T  2330596 aaatgtgtcacttattgacctagggcccgcttggattgacttattttttagctt----aagtaaataaatttatatgtattatatttgtcaatgtagttt 2330501  T
Q  159 ataaaaaagca 169  Q
    ||  |||||||    
T  2330500 atgtaaaagca 2330490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 7148750 - 7148807
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||||||||| ||||||||||||||||||||| |||||||  |||||||||||||    
T  7148750 cccgtttggattggcttatttttgagcttatgcaaataaataagcttttatgtattat 7148807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 28663407 - 28663463
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaagtaaat-aaattttatgtattat 141  Q
    |||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||    
T  28663407 ccgtttggattgacttatttttgagcttatgcaaataaatgagcttttatgtattat 28663463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 36740886 - 36740924
Alignment:
Q  89 tttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  36740886 tttggattgacttatttttgagcttatgcaaataaataa 36740924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 52274225 - 52274171
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaagtaaataaa-ttttatgtattat 141  Q
    ||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  52274225 gtttgaattggcttatttttgagcttatgcaaataaataaacttttatgtattat 52274171  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 488488 - 488435
Alignment:
Q  89 tttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||||||||||||||||||||||||||| ||| |||  |||||||||||||    
T  488488 tttggattgacttatttttgagcttatgcaaataagtaagcttttatgtattat 488435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 54412154 - 54412098
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaagtaaataaa-ttttatgtattat 141  Q
    |||||||||||| ||||||||| | ||||||||| |||||||| |||||||||||||    
T  54412154 ccgtttggattggcttattttttaacttatgcaaataaataaatttttatgtattat 54412098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 34633560 - 34633513
Alignment:
Q  80 taggacccgtttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    ||||||| |||||||||||||||||||| |||||| |||| |||||||    
T  34633560 taggacctgtttggattgacttatttttaagcttacgcaaataaataa 34633513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 39932860 - 39932805
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaagtaaataaa-ttttatgtattat 141  Q
    ||||| ||||||||||||||| | ||||||||| |||||||| |||||||||||||    
T  39932860 cgtttcgattgacttatttttaaacttatgcaaataaataaacttttatgtattat 39932805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 43136722 - 43136683
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  43136722 gtttggattgacttatttttgagcttatgcgaataaataa 43136683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 48238055 - 48238098
Alignment:
Q  83 gacccgtttggattgacttatttttgagcttatgcaagtaaata 126  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||    
T  48238055 gacccgtttgaattgacttatttttgagtttatgcaaataaata 48238098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2330648 - 2330610
Alignment:
Q  1 taattaaaattacattaaagtggaaaccatcatttattt 39  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  2330648 taattaaaattacattaaagttaaaaccatcatttattt 2330610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 28074338 - 28074400
Alignment:
Q  80 taggacccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    |||| ||| |||||||||||||||||||  |||||||||| |||||||  |||||||||||||    
T  28074338 tagggcccatttggattgacttattttttcgcttatgcaaataaataagcttttatgtattat 28074400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Original strand, 35124355 - 35124385
Alignment:
Q  89 tttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||||||||||||||||||    
T  35124355 tttggattgacttatttttgagcttatgcaa 35124385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Original strand, 35405653 - 35405683
Alignment:
Q  89 tttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||||||||||||||||||    
T  35405653 tttggattgacttatttttgagcttatgcaa 35405683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 3564185 - 3564218
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||| |||||||||||||||||    
T  3564185 ccgtttggattgacttgtttttgagcttatgcaa 3564218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 3564383 - 3564354
Alignment:
Q  87 cgtttggattgacttatttttgagcttatg 116  Q
    ||||||||||||||||||||||||||||||    
T  3564383 cgtttggattgacttatttttgagcttatg 3564354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 9153703 - 9153670
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||| ||||||||||||    
T  9153703 ccgtttggattgacttattttagagcttatgcaa 9153670  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 21216425 - 21216392
Alignment:
Q  83 gacccgtttggattgacttatttttgagcttatg 116  Q
    ||||||||||||||||||||||||| ||||||||    
T  21216425 gacccgtttggattgacttattttttagcttatg 21216392  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 22273761 - 22273790
Alignment:
Q  89 tttggattgacttatttttgagcttatgca 118  Q
    ||||||||||||||||||||||||||||||    
T  22273761 tttggattgacttatttttgagcttatgca 22273790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 38345727 - 38345760
Alignment:
Q  82 ggacccgtttggattgacttatttttgagcttat 115  Q
    |||||||||||||||| |||||||||||||||||    
T  38345727 ggacccgtttggattggcttatttttgagcttat 38345760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 38345942 - 38345909
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||||| |||||||||||||||    
T  38345942 ccgtttggattgacttatgtttgagcttatgcaa 38345909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 52700664 - 52700631
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||| ||||||||||||    
T  52700664 ccgtttggattgacttattttagagcttatgcaa 52700631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 825847 - 825795
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgt 136  Q
    ||||||||||||| || |||||| ||||||||||| ||||||| |||||||||    
T  825847 cccgtttggattggctaattttttagcttatgcaaataaataagattttatgt 825795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 948251 - 948223
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  948251 gtttggattgacttatttttgagcttatg 948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 1374487 - 1374451
Alignment:
Q  83 gacccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  1374487 gacccatttggattggcttatttttgagcttatgcaa 1374451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 12022987 - 12023019
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||||||| ||||||||||||    
T  12022987 cgtttggattgacttattttagagcttatgcaa 12023019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 32628747 - 32628779
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||| |||||||||||||||||||||    
T  32628747 cgtttggattgtcttatttttgagcttatgcaa 32628779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 36498698 - 36498654
Alignment:
Q  194 ttcggtgactttgtctctacctctctcttaaccgataattctctc 238  Q
    ||||||||||||||||||| ||||||  ||||| |||||||||||    
T  36498698 ttcggtgactttgtctctatctctcttctaaccaataattctctc 36498654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 1942990 - 1943045
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  1942990 cgtttggattggcttatttttgagcttatgcaagtaaataagtttttatgtattat 1943045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 42706763 - 42706862
Alignment:
Q  74 ttgacctaggacccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat--at----ttgtcaaggtagtttataaaaaa 166  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||  ||||| |||||||  ||    |||||||||||||||||||||||    
T  42706763 ttgacatagggcccgtttggattggcttatttttgagcttatgcaaataaataagcttttaagtattattcataagcttgtcaaggtagtttataaaaaa 42706862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 28625453 - 28625500
Alignment:
Q  80 taggacccgtttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  28625453 tagggcccgtttggattgacttattttttagcttatgcaaataaataa 28625500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 40696981 - 40697036
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    |||||| |||||||||||||||||||||||||| |||||||  |||||||||||||    
T  40696981 cgtttgaattgacttatttttgagcttatgcaaataaataagtttttatgtattat 40697036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 41419667 - 41419619
Alignment:
Q  84 acccgtttggattgacttatttttgagcttatgcaagtaaataaatttt 132  Q
    ||||||||||||||||||| ||||||||||||| || ||||||| ||||    
T  41419667 acccgtttggattgacttacttttgagcttatgaaaataaataagtttt 41419619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 1372112 - 1372081
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||||||||||||||    
T  1372112 gtttggattgacttatttttgagcttatgcaa 1372081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 6125260 - 6125322
Alignment:
Q  80 taggacccgtttggattgacttatttttgagcttatgcaagtaaataaa-ttttatgtattat 141  Q
    |||| |||||| | |||||||||||||||| |||||| || |||||||| |||||||||||||    
T  6125260 taggtcccgttcgaattgacttatttttgaacttatgtaaataaataaacttttatgtattat 6125322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 11163391 - 11163357
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||||| |||||||||||    
T  11163391 cccgtttggattgacttattttttagcttatgcaa 11163357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 28970204 - 28970166
Alignment:
Q  81 aggacccgtttggattgacttatttttgagcttatgcaa 119  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  28970204 aggacctgtttggattggcttatttttgagcttatgcaa 28970166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 3520627 - 3520590
Alignment:
Q  82 ggacccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  3520627 ggacctgtttggattgacttattttttagcttatgcaa 3520590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 10274260 - 10274309
Alignment:
Q  93 gattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| ||||||    
T  10274260 gattgacttatttttgagtttatgcaaataaataagattttatatattat 10274309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 31637197 - 31637164
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||||||| |||||||||||||    
T  31637197 ccgtttggattgacttatttatgagcttatgcaa 31637164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 1576815 - 1576779
Alignment:
Q  80 taggacccgtttggattgacttatttttgagcttatg 116  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  1576815 tagggcccgtttggattggcttatttttgagcttatg 1576779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 1608000 - 1608036
Alignment:
Q  80 taggacccgtttggattgacttatttttgagcttatg 116  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  1608000 tagggcccgtttggattggcttatttttgagcttatg 1608036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 28870204 - 28870283
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaagtaaataaa-ttttatgtattatatttgtcaaggtagtttataaaaa 165  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||  |||||||||||| |||||||| |||| |||| ||||    
T  28870204 cgtttagattggcttatttttgagcttatgcaaataaataaacatttatgtattatttttgtcaaagtagcttatgaaaa 28870283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 45267440 - 45267485
Alignment:
Q  82 ggacccgtttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||    
T  45267440 ggacctgtttggattgacttatttttgagcttatgcaaataaataa 45267485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 36178515 - 36178556
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  36178515 ccgtttggattgacttacttttgagcttatgcaaataaataa 36178556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 38781059 - 38781104
Alignment:
Q  93 gattgacttatttttgagcttatgcaagtaaataaattttatgtat 138  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  38781059 gattggcttatttttgagcttatgcaaataaataagttttatgtat 38781104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 7145207 - 7145238
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatg 116  Q
    ||||||||||||||||||||||||||||||||    
T  7145207 cccgtttggattgacttatttttgagcttatg 7145238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 7537092 - 7537050
Alignment:
Q  184 tgactttgagttcggtgactttgtctctacctctctcttaacc 226  Q
    |||||||||||| |||||||||||||||| ||||||| |||||    
T  7537092 tgactttgagtttggtgactttgtctctatctctctcctaacc 7537050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Complemental strand, 26946223 - 26946193
Alignment:
Q  89 tttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||||||||||||||||||    
T  26946223 tttggattgacttatttttgagcttatgcaa 26946193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 26988117 - 26988155
Alignment:
Q  81 aggacccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  26988117 aggacacgtttggattgaattatttttgagcttatgcaa 26988155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 16225474 - 16225507
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||| ||||||||||||    
T  16225474 ccgtttggattgacttattttagagcttatgcaa 16225507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 48819272 - 48819317
Alignment:
Q  80 taggacccgtttggattgacttatttttgagcttatgcaagtaaat 125  Q
    |||| ||| ||||||||| ||||||||||||||||||||| |||||    
T  48819272 tagggcccatttggattggcttatttttgagcttatgcaaataaat 48819317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 49315839 - 49315794
Alignment:
Q  188 tttgagttcggtgactttgtctctacctctctcttaaccgataatt 233  Q
    ||||||||||||||||||||||||| ||||||| ||| | ||||||    
T  49315839 tttgagttcggtgactttgtctctatctctctcataatcaataatt 49315794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 994622 - 994650
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  994622 gtttggattgacttatttttgagcttatg 994650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 26946014 - 26946042
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  26946014 gtttggattgacttatttttgagcttatg 26946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 26988324 - 26988296
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  26988324 gtttggattgacttatttttgagcttatg 26988296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 37431146 - 37431186
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    ||||||||||| ||||||||||||||| ||||| |||||||    
T  37431146 cgtttggattggcttatttttgagcttgtgcaaataaataa 37431186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 9140651 - 9140703
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaataaa-ttttatgt 136  Q
    ||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  9140651 cccgtttggattgacttatttttgagcttatgcatataaataaacttttatgt 9140703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 38215987 - 38216021
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||||||||||||||||||||||    
T  38215987 cccgtttggattgacttatttttgagcttatgcaa 38216021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 17317158 - 17317199
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  17317158 ccgtttggattgacttatttttgagcttatgtaaataaataa 17317199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 18276909 - 18276949
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaat 125  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  18276909 cccgcttggattgacttatttttgagcttatgcaaataaat 18276949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 29774929 - 29774897
Alignment:
Q  80 taggacccgtttggattgacttatttttgagct 112  Q
    |||||||||||||||||||||||||||||||||    
T  29774929 taggacccgtttggattgacttatttttgagct 29774897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 37419899 - 37419950
Alignment:
Q  89 tttggattgacttatttttgagcttatgcaagtaaataa-attttatgtatt 139  Q
    |||||||||||||| |||||||||||||||| |||||||  |||||||||||    
T  37419899 tttggattgacttaattttgagcttatgcaaataaataagcttttatgtatt 37419950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 14818703 - 14818745
Alignment:
Q  197 ggtgactttgtctctacctctctcttaaccgataattctctct 239  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||    
T  14818703 ggtgactttgtctctatctctctcataaccaataattctctct 14818745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 35997287 - 35997324
Alignment:
Q  95 ttgacttatttttgagcttatgcaagtaaataaatttt 132  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  35997287 ttgacttatttttgagcttatgcaaataaataagtttt 35997324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 1208617 - 1208653
Alignment:
Q  203 tttgtctctacctctctcttaaccgataattctctct 239  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctct 1208653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 12224013 - 12223981
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||| |||||||||||||||||||||    
T  12224013 cgtttggattggcttatttttgagcttatgcaa 12223981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 48878 - 48823
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaagtaaataaattttatgtattat 141  Q
    ||||||||||||||||||||| |||||||| ||| | ||||| |||||||||||||    
T  48878 ccgtttggattgacttattttcgagcttatacaaattaataacttttatgtattat 48823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 32131399 - 32131438
Alignment:
Q  80 taggacccgtttggattgacttatttttgagcttatgcaa 119  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  32131399 taggacccatttggattgacttatttttgagcttatgcaa 32131438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 34286668 - 34286614
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||||||||||||||||||||||||| || |||||||  |||||||||||||    
T  34286668 gtttggattgacttatttttgagcttatgtaaataaataagcttttatgtattat 34286614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 9130937 - 9130990
Alignment:
Q  84 acccgtttggattgacttatttttgagcttatgcaagtaaataaa-ttttatgt 136  Q
    ||||||||||||||||||  |||||||||||||||| |||||||| ||||||||    
T  9130937 acccgtttggattgacttgattttgagcttatgcaaataaataaacttttatgt 9130990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 28879036 - 28879093
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    |||||||| |||| ||||||||||||||||||||| |||||||  |||||||||||||    
T  28879036 cccgtttgaattggcttatttttgagcttatgcaaataaataagcttttatgtattat 28879093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 9781196 - 9781235
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaagtaaataa 127  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  9781196 gtttggattgacttattttagagcttatgcaaataaataa 9781235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 116
Target Start/End: Complemental strand, 11460827 - 11460796
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatg 116  Q
    ||||||||||||||||||||||||||||||||    
T  11460827 cccgtttggattgacttatttttgagcttatg 11460796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 18396914 - 18396953
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaa 124  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  18396914 cccgtttggattggcttatttttgagcttatgcaaataaa 18396953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 2019770 - 2019737
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||| ||||||||||||    
T  2019770 ccgtttggattgacttattttagagcttatgcaa 2019737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 32213122 - 32213073
Alignment:
Q  93 gattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||||||||||| ||||||||||| |||||||  |||||||||||||    
T  32213122 gattgacttatttttaagcttatgcaaataaataagcttttatgtattat 32213073  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 11460879 - 11460851
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  11460879 gtttggattgacttatttttgagcttatg 11460851  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 19925509 - 19925477
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgca 118  Q
    ||||||||||||||||||||| |||||||||||    
T  19925509 ccgtttggattgacttattttagagcttatgca 19925477  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 35168359 - 35168399
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaat 125  Q
    ||||||||||||| |||||||||||||||||| || |||||    
T  35168359 cccgtttggattggcttatttttgagcttatgtaaataaat 35168399  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 47511024 - 47511078
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    |||||||||| ||||||||||||||||||||| |||||||  |||||||||||||    
T  47511024 gtttggattggcttatttttgagcttatgcaaataaataagcttttatgtattat 47511078  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 29378619 - 29378680
Alignment:
Q  81 aggacccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    |||||| |||||||||| ||||| ||||||||||||||| |||||||  |||||||||||||    
T  29378619 aggacctgtttggattggcttatctttgagcttatgcaaataaataagcttttatgtattat 29378680  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 30181516 - 30181548
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaa 119  Q
    |||||||||||||||||||||||||||||||||    
T  30181516 cgtttggattgacttatttttgagcttatgcaa 30181548  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 29778433 - 29778476
Alignment:
Q  89 tttggattgacttatttttgagcttatgcaagtaaataaatttt 132  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||    
T  29778433 tttgaattgacttattttttagcttatgcaaataaataaatttt 29778476  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 38372525 - 38372556
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||||||||||||||    
T  38372525 gtttggattgacttatttttgagcttatgcaa 38372556  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 22515633 - 22515595
Alignment:
Q  81 aggacccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  22515633 aggacccatttggattgacttatatttgagcttatgcaa 22515595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 14691409 - 14691350
Alignment:
Q  83 gacccgtttggattgacttatttttgagcttatgcaagtaaataaa--ttttatgtattat 141  Q
    ||||||||||||||||||| ||||||| ||| ||||| ||||||||  |||||||||||||    
T  14691409 gacccgtttggattgacttgtttttgaactt-tgcaaataaataaagcttttatgtattat 14691350  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 33288199 - 33288150
Alignment:
Q  93 gattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||| ||||||||||||||||||| |||||||  |||||||||||||    
T  33288199 gattgacatatttttgagcttatgcaaataaataagcttttatgtattat 33288150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 1053974 - 1054006
Alignment:
Q  84 acccgtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||| ||||    
T  1053974 acccgtttggattgacttatttttgagcatatg 1054006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 1054175 - 1054119
Alignment:
Q  86 ccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||| ||| ||||| |||||||||||||||| |||||||  |||||||||||||    
T  1054175 ccgtttgtattcacttagttttgagcttatgcaaataaataagcttttatgtattat 1054119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 23119850 - 23119878
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  23119850 gtttggattgacttatttttgagcttatg 23119878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 29390461 - 29390489
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  29390461 gtttggattgacttatttttgagcttatg 29390489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 2034337 - 2034280
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||  |||||||||||||    
T  2034337 cccgtttggattggcttgtttttgagcttatgcaaataaataagcttttatgtattat 2034280  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 6793464 - 6793531
Alignment:
Q  172 gtagcacttcgatgactttgagttcggtgactttgtctctacctctctcttaaccgataattctctct 239  Q
    |||||| ||||||||||||| ||| ||||| |||||||||| |||| || ||||| |||||| |||||    
T  6793464 gtagcatttcgatgactttgtgtttggtgattttgtctctatctctatcctaaccaataattatctct 6793531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 11795524 - 11795558
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||| |||||||||||||    
T  11795524 cccgtttggattgacttatttctgagcttatgcaa 11795558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 21025335 - 21025278
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    ||||||||||||| || |||||| ||||||||||| |||||||  |||||||||||||    
T  21025335 cccgtttggattggctaattttttagcttatgcaaataaataagcttttatgtattat 21025278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 25430882 - 25430854
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  25430882 gtttggattgacttatttttgagcttatg 25430854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 18101 - 18136
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaag 120  Q
    |||| |||||||||||||||||||||||||||||||    
T  18101 cccgattggattgacttatttttgagcttatgcaag 18136  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 15444090 - 15444055
Alignment:
Q  85 cccgtttggattgacttatttttgagcttatgcaag 120  Q
    |||| |||||||||||||||||||||||||||||||    
T  15444090 cccgattggattgacttatttttgagcttatgcaag 15444055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 29270328 - 29270359
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||||||||||||||    
T  29270328 gtttggattgacttatttttgagcttatgcaa 29270359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 34707832 - 34707801
Alignment:
Q  88 gtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||||||||||||||    
T  34707832 gtttggattgacttatttttgagcttatgcaa 34707801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 37601131 - 37601092
Alignment:
Q  89 tttggattgacttatttttgagcttatgcaagtaaataaa 128  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  37601131 tttggattgacttattttagagcttatgcaaataaataaa 37601092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 45331404 - 45331346
Alignment:
Q  84 acccgtttggattgacttatttttgagcttatgcaagtaaataa-attttatgtattat 141  Q
    |||||||||||||| ||||||||| |||||||| || |||||||  |||||||||||||    
T  45331404 acccgtttggattggcttattttttagcttatgtaaataaataaccttttatgtattat 45331346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 52421070 - 52421104
Alignment:
Q  98 acttatttttgagcttatgcaagtaaataaatttt 132  Q
    |||||||||||||||||||||| ||||||||||||    
T  52421070 acttatttttgagcttatgcaaataaataaatttt 52421104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 35480488 - 35480447
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaagtaaataaa 128  Q
    ||||||||||||||||||||| ||||||||||  ||||||||    
T  35480488 cgtttggattgacttattttttagcttatgcagataaataaa 35480447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 10272088 - 10272120
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||| |||||||||||    
T  10272088 cgtttggattgacttattttttagcttatgcaa 10272120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 35480312 - 35480340
Alignment:
Q  88 gtttggattgacttatttttgagcttatg 116  Q
    |||||||||||||||||||||||||||||    
T  35480312 gtttggattgacttatttttgagcttatg 35480340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 89362 - 89313
Alignment:
Q  84 acccgtttggattgacttatttttgagcttatgcaagtaaataaatttta 133  Q
    |||| ||||||||||||||||||| ||||||||||| |||| || |||||    
T  89362 acccatttggattgacttatttttaagcttatgcaaataaaaaagtttta 89313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 97115 - 97147
Alignment:
Q  87 cgtttggattgacttatttttgagcttatgcaa 119  Q
    ||||||||||||||||||||||||||| |||||    
T  97115 cgtttggattgacttatttttgagcttttgcaa 97147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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