View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_47 (Length: 250)
Name: NF10539_low_47
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35946293 - 35946528
Alignment:
| Q |
1 |
cactgcttgttttatttatagtattattaggcagtgtataactttttcttgaaggaggcagtaatataatttattatcatcccaaagagggattcattcg |
100 |
Q |
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| T |
35946293 |
cactgcttgttttatttatagtattattaggcagtgtataactttttcttgaaggaggcagtaatataatttattatcatcccaaagagggattcattcg |
35946392 |
T |
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| Q |
101 |
cgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggtatcaattcgtttgaagacattcacatctaag |
200 |
Q |
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| T |
35946393 |
cgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggtatcaattcgtttgaagacattcacatctaag |
35946492 |
T |
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| Q |
201 |
tcaagtccaccattggcgcactgatccactattctc |
236 |
Q |
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| T |
35946493 |
tcaagtccaccattggcgcactgatccactattctc |
35946528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 35952508 - 35952672
Alignment:
| Q |
71 |
ttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggta |
170 |
Q |
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| T |
35952508 |
ttattatcatcacaaagagtgattaattcgcattatttaacagttaacaaagacatagttaaccgtaaggtgaccctgctggtaaccttgtccattggta |
35952607 |
T |
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| Q |
171 |
tcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattct |
235 |
Q |
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| T |
35952608 |
tcaatttgattgaagacattcacatccaagtctaacccaccattggcacattggtccactattct |
35952672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 35939408 - 35939533
Alignment:
| Q |
111 |
caattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggtatcaattcgtttgaagacattcacatctaagtcaagtccac |
210 |
Q |
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| T |
35939408 |
caattaacaaagctatagttaactgtaaggtgaccattctgaacgccctgtccattggtatcaatttgattgaagacattcacatctaagtcaagtccac |
35939507 |
T |
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| Q |
211 |
cattggcgcactgatccactattctc |
236 |
Q |
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| T |
35939508 |
cgttggagcattggtccactattctc |
35939533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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