View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_48 (Length: 250)

Name: NF10539_low_48
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_48
NF10539_low_48
[»] chr1 (4 HSPs)
chr1 (14-250)||(8115489-8115725)
chr1 (128-238)||(50371509-50371619)
chr1 (70-104)||(50371449-50371483)
chr1 (76-104)||(39080336-39080364)
[»] chr2 (2 HSPs)
chr2 (70-238)||(26261590-26261765)
chr2 (76-239)||(24233391-24233565)
[»] chr7 (3 HSPs)
chr7 (70-209)||(44002529-44002677)
chr7 (128-195)||(3799401-3799468)
chr7 (70-208)||(28105929-28106067)
[»] chr8 (3 HSPs)
chr8 (130-238)||(12268502-12268610)
chr8 (135-238)||(7754827-7754930)
chr8 (135-238)||(37046622-37046725)
[»] chr5 (4 HSPs)
chr5 (128-234)||(17463218-17463324)
chr5 (169-238)||(4177568-4177637)
chr5 (135-179)||(13288824-13288868)
chr5 (70-104)||(13288759-13288793)
[»] chr4 (2 HSPs)
chr4 (76-238)||(9925419-9925589)
chr4 (138-189)||(10389454-10389505)
[»] chr3 (1 HSPs)
chr3 (186-238)||(29843443-29843495)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 8115489 - 8115725
Alignment:
Q  14 agagatatatggttctaacttatttttcaaagggtgcatattaggggcttccattttgttgaaaatatatggttctaatatatgttgaatgattaatgtc 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8115489 agagatatatggttctaacttatttttgaaagggtgcatattaggggcttccattttgttgaaaatatatggttctaatatatgttgaatgattaatgtc 8115588  T
Q  114 gaaatttttggtatatgttggaaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8115589 gaaatttttggtatatgttggaaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctt 8115688  T
Q  214 caaaatttcaggttctacattttttccttcagtcttc 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  8115689 caaaatttcaggttctacattttttccttcagtcttc 8115725  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 50371509 - 50371619
Alignment:
Q  128 atgttggaaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggtt 227  Q
    |||||| ||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||| |||||||||  || | ||||||||||||    
T  50371509 atgttgaaaaatataattgctaattttgttatatgttggatgctgaatgttgataaattttggtatttgttactaatatatatctcctaaatttcaggtt 50371608  T
Q  228 ctacatttttt 238  Q
    |||||||||||    
T  50371609 ctacatttttt 50371619  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 50371449 - 50371483
Alignment:
Q  70 tgttgaaaatatatggttctaatatatgttgaatg 104  Q
    ||||| |||||||||||||||||||||||||||||    
T  50371449 tgttgcaaatatatggttctaatatatgttgaatg 50371483  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 39080364 - 39080336
Alignment:
Q  76 aaatatatggttctaatatatgttgaatg 104  Q
    |||||||||||||||||||||||||||||    
T  39080364 aaatatatggttctaatatatgttgaatg 39080336  T

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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 26261590 - 26261765
Alignment:
Q  70 tgttgaaaatatatggttctaatatatgttgaatgattaatgtcgaaatttttggtatatgttggaa-------aatataattgctaattttgttatatg 162  Q
    ||||| ||||||||| ||||||||||||||| ||| | ||||||||||||| || ||||||||| ||       |||||||||| ||||||| |||||||    
T  26261590 tgttgcaaatatatgattctaatatatgttggatgttgaatgtcgaaatttatgttatatgttgaaagttgaaaaatataattggtaattttcttatatg 26261689  T
Q  163 ttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttctacatttttt 238  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||||||    
T  26261690 gtggacgttgaatgttgacaaattttggtatatgttgccaatatatgcctcctaaatttcaagttctacatttttt 26261765  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 239
Target Start/End: Complemental strand, 24233565 - 24233391
Alignment:
Q  76 aaatatatggttctaatatatgttgaatgattaatgtcgaaatttttggtatatgttgg-------aaaatataattgctaat----tttgttatatgtt 164  Q
    |||||||| |||||||||||||||||||| | |||||| ||| ||||| |||||||||        |||||||||||||||||    |||||| ||||||    
T  24233565 aaatatatagttctaatatatgttgaatgttgaatgtcaaaaattttgttatatgttgattgctgaaaaatataattgctaatcttgtttgttgtatgtt 24233466  T
Q  165 ggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttctacattttttc 239  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| || | ||||||| ||||| ||||||||||    
T  24233465 ggacgatgaatgtttacaaattttggtatatgttgctaatatatgtctcctaaatttcgggttccacattttttc 24233391  T

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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 44002677 - 44002529
Alignment:
Q  70 tgttgaaaatatatggttctaatatatgttgaatgattaatgtcgaaatttttggtatatgttgga-------aaatataattgctaattttgttatat- 161  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |       ||||||||||||||||||||||||||     
T  44002677 tgttgcaaatatatggttctaatatatgttgaatgttgaatgtcgaaatttttgttatatgttgaatgttgaaaaatataattgctaattttgttatata 44002578  T
Q  162 -gttggacgttgaatgttgacaaattttggtatatgttgctaatatatg 209  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||    
T  44002577 tgttggacgttgaatgttgacaagttttggtatatgttgctaatatatg 44002529  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 3799468 - 3799401
Alignment:
Q  128 atgttggaaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatat 195  Q
    |||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  3799468 atgttgaaatatataattgctatttttgttatatgttggacattgaatgttgacaaattttggtatat 3799401  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 28105929 - 28106067
Alignment:
Q  70 tgttgaaaatatatggttctaatatatgttgaatgattaatgtcgaaatttttggtatatgttgga-------aaatataattgctaattttgttatatg 162  Q
    ||||| ||||||||||||||||||||||| |||||       |||||||||||| ||||||||| |       ||||| ||||| | |||||||||||      
T  28105929 tgttgcaaatatatggttctaatatatgtcgaatg-------tcgaaatttttgttatatgttgaatgttgaaaaatacaattgatgattttgttataca 28106021  T
Q  163 ttggacgttgaatgttgacaaattttggtatatgttgctaatatat 208  Q
     |||| ||||||| | ||||||||||||||||| ||||||||||||    
T  28106022 atggaagttgaatatcgacaaattttggtatatattgctaatatat 28106067  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 12268610 - 12268502
Alignment:
Q  130 gttggaaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttct 229  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||    
T  12268610 gttgaaaaatataattgctaattttgttatatgatggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctcctaaattttatgttct 12268511  T
Q  230 acatttttt 238  Q
    | |||||||    
T  12268510 aaatttttt 12268502  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 7754930 - 7754827
Alignment:
Q  135 aaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttctacatt 234  Q
    |||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||    
T  7754930 aaaatataattgctaattttgttacaaagtggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctcctaaatttcaggttctatatt 7754831  T
Q  235 tttt 238  Q
    ||||    
T  7754830 tttt 7754827  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 37046622 - 37046725
Alignment:
Q  135 aaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttctacatt 234  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||  |||||||| | | | |||||||||||||||||||    
T  37046622 aaaatataattgctacttttgttatatgctagacgttgaatgttgacaaattttgatatatgtttttaatatattcttcctaaatttcaggttctacatt 37046721  T
Q  235 tttt 238  Q
    ||||    
T  37046722 tttt 37046725  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 17463218 - 17463324
Alignment:
Q  128 atgttggaaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggtt 227  Q
    |||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||    
T  17463218 atgttgaaaaatataattgctaattttgttatatgttgggtgttgaatgttgacaaattttggtatatattgctaatatatgcctcctaaattttaggtt 17463317  T
Q  228 ctacatt 234  Q
     ||||||    
T  17463318 ttacatt 17463324  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 4177568 - 4177637
Alignment:
Q  169 gttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttctacatttttt 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||| ||||||||||    
T  4177568 gttgaatgttgacaaattttggtatatgttactaatatatgcctcctaaatttcaagttttacatttttt 4177637  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 13288824 - 13288868
Alignment:
Q  135 aaaatataattgctaattttgttatatgttggacgttgaatgttg 179  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||    
T  13288824 aaaatataattgctaattttgctatatgatggacgttgaatgttg 13288868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 13288759 - 13288793
Alignment:
Q  70 tgttgaaaatatatggttctaatatatgttgaatg 104  Q
    ||||| |||||||||||||||||||||||||||||    
T  13288759 tgttgcaaatatatggttctaatatatgttgaatg 13288793  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 9925419 - 9925589
Alignment:
Q  76 aaatatatggttctaatatatgttgaatgattaatgtcgaaatttttggtata-------tgttggaaaatataattgctaattttgttatatgttggac 168  Q
    |||||||||||||||||||| |||||||| | |||||| || |||| | ||||       ||||| |||||||||||| |||||||||||||||||| ||    
T  9925419 aaatatatggttctaatataagttgaatgttgaatgtccaatttttcgttatacgttgaatgttgaaaaatataattgttaattttgttatatgttgaac 9925518  T
Q  169 gttgaatgttgacaaattttggtatatgttgctaatatatgccttc-aaaatttcaggttctacatttttt 238  Q
    ||||||||||||||||||| ||||||||| | |||||||||||| | ||| ||| |||||||| |||||||    
T  9925519 gttgaatgttgacaaatttaggtatatgtcgttaatatatgcctcctaaatttttaggttctaaatttttt 9925589  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 10389454 - 10389505
Alignment:
Q  138 atataattgctaattttgttatatgttggacgttgaatgttgacaaattttg 189  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  10389454 atatagttgctaatttggttatatgttggactttgaatgttgacaaattttg 10389505  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 29843495 - 29843443
Alignment:
Q  186 tttggtatatgttgctaatatatgccttcaaaatttcaggttctacatttttt 238  Q
    ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||    
T  29843495 tttggtatatgttgctactatatacctcctaaatttcaagttctacatttttt 29843443  T

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