View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_49 (Length: 248)
Name: NF10539_low_49
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12976931 - 12976702
Alignment:
| Q |
1 |
caaaagtccgcaacaattcttccaatccctcttcttcgacttctccaaaatcagctcgtgcaatgacatcatttgagccgcccattgaagctgccgtgga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
12976931 |
caaaagtccgcaacaattcttcctctccctcttcttcgacttctccaaaatccgctcgtgcaatgacatcattggagccgcccattgaagctgccgtaga |
12976832 |
T |
|
| Q |
101 |
accgaaaagtttagatgtaatcccctatcttgacaaggaattgcagccacaagtgaccacattgtaaacaataaaattgaactcattgtataaatagcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
12976831 |
accgaaaagtttagatgtaatcccctatcttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagtca |
12976732 |
T |
|
| Q |
201 |
atgcaagaccatttgtagcaacaagttcat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12976731 |
atgcaagaccatttgtagcaacaagttcat |
12976702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13009330 - 13009101
Alignment:
| Q |
1 |
caaaagtccgcaacaattcttccaatccctcttcttcgacttctccaaaatcagctcgtgcaatgacatcatttgagccgcccattgaagctgccgtgga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
13009330 |
caaaagtccgcaacaattcttcctctccctcttcttcgacttctccaaaatccgctcgtgcaatgacatcattggagacgcccatggaagctgccgtgga |
13009231 |
T |
|
| Q |
101 |
accgaaaagtttagatgtaatcccctatcttgacaaggaattgcagccacaagtgaccacattgtaaacaataaaattgaactcattgtataaatagcca |
200 |
Q |
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| T |
13009230 |
accgaaaagttgagatgtaagcccctttcttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagcca |
13009131 |
T |
|
| Q |
201 |
atgcaagaccatttgtagcaacaagttcat |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
13009130 |
atgcaagaccatttgtagcaacaagttcat |
13009101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13012888 - 13012659
Alignment:
| Q |
1 |
caaaagtccgcaacaattcttccaatccctcttcttcgacttctccaaaatcagctcgtgcaatgacatcatttgagccgcccattgaagctgccgtgga |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |||| ||| || |||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
13012888 |
caaaagtccgcaacaactcttcatctccctcttcttcgacttccccaacatccgcacgtgcaatgatatcaccggagccgcccattgaagttgccgtgga |
13012789 |
T |
|
| Q |
101 |
accgaaaagtttagatgtaatcccctatcttgacaaggaattgcagccacaagtgaccacattgtaaacaataaaattgaactcattgtataaatagcca |
200 |
Q |
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|
|||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
13012788 |
accgaaaaatttagattcaattccctatcttgacaaggaaatgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagtcg |
13012689 |
T |
|
| Q |
201 |
atgcaagaccatttgtagcaacaagttcat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
13012688 |
atgcaagaccatttgtagcaacaagttcat |
13012659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13031688 - 13031456
Alignment:
| Q |
1 |
caaaagtccgcaacaattcttccaatccctcttcttcgacttctccaaaatcagctcgtgcaatgacatcatttgagccgcccattgaag---ctgccgt |
97 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||| | ||| ||| || |||||||| ||||| |||||||||||||||| ||||||| |
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| T |
13031688 |
caaaagtccgcaacaactcttcatctccctcttcttcgactccaacaacatccgcacgtgcaattgcatcaccggagccgcccattgaagaagctgccgt |
13031589 |
T |
|
| Q |
98 |
ggaaccgaaaagtttagatgtaatcccctatcttgacaaggaattgcagccacaagtgaccacattgtaaacaataaaattgaactcattgtataaatag |
197 |
Q |
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||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13031588 |
ggaaccgaaaaatttatatttaatcccctatcttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatag |
13031489 |
T |
|
| Q |
198 |
ccaatgcaagaccatttgtagcaacaagttcat |
230 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13031488 |
ccaatgcaagaccatttgtagcaacaagttcat |
13031456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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