View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10539_low_5 (Length: 450)
Name: NF10539_low_5
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 32264839 - 32264413
Alignment:
| Q |
16 |
aatatgatcaatttaaactataagaaaaatcaaatattatatagttacgtgcagttatttgcatcttataattttatctactattattatttgtgtcaca |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32264839 |
aatatgattaatttaaactataagaaaaatcaaatattatacagttacttgcaattatttgcatcttataattttatctactattatt---tgtgtcaca |
32264743 |
T |
|
| Q |
116 |
ataatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggttaaaaacaagttgtagattcaaccaagtccctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32264742 |
ataatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggttataaacaagttgtagattcaaccaagtccctct |
32264643 |
T |
|
| Q |
216 |
cccccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32264642 |
cccccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaac |
32264543 |
T |
|
| Q |
316 |
cctgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccgcagtgtcgcaacatctttgata |
415 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32264542 |
ctcgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccgtagtgtcgcaacatctttgata |
32264443 |
T |
|
| Q |
416 |
ttgtgtactcattatatatgtgtctctgct |
445 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |
|
|
| T |
32264442 |
ttgtgtactcattatatatgcgtctgtgct |
32264413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 32255788 - 32255624
Alignment:
| Q |
16 |
aatatgatcaatttaaactataagaaaaatcaaatattatatagttacgtgcagttatttgcatcttataattttatctactattattatttgtgtcac- |
114 |
Q |
| |
|
||||| || |||| ||||||||||| |||||||||||||||||||||| |||| ||| ||||||| ||||||||||| |||||| ||||||| |||| |
|
|
| T |
32255788 |
aatattataaattgaaactataagagaaatcaaatattatatagttacttgcaattacttgcatcatataattttat---ctattactatttgtatcaca |
32255692 |
T |
|
| Q |
115 |
aataatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggtta |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32255691 |
aataatcattggaatactttttcaatcaaaat-aaaaataatcatagaaaaagaattcaatacaggtta |
32255624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 218 - 393
Target Start/End: Complemental strand, 32255577 - 32255402
Alignment:
| Q |
218 |
cccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaaccc |
317 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |||||| ||||||||||||| |||||| |||| ||| ||||| | |||||||||| ||||||||||| |
|
|
| T |
32255577 |
cccttattgttggtcttagtttaggggaaagtttgtgaagctcacggaacagaatttttatgtcaagtgtgaggcacccaactagtgcccatgaaaaccc |
32255478 |
T |
|
| Q |
318 |
tgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccg |
393 |
Q |
| |
|
||||| ||||| ||| | |||| | ||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
32255477 |
cgccctaatgaccgcatgtagcattgcaatgtgttgagcccctggtgacatttgataagccagaacaatccaaccg |
32255402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 32249601 - 32249544
Alignment:
| Q |
370 |
tgataagccagaacaatccaaccgcagtgtcgcaacatctttgatattgtgtactcat |
427 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
32249601 |
tgataagccagaacaatccaatcatagcaccgcaacatctttgatattgtgtactcat |
32249544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 23203588 - 23203510
Alignment:
| Q |
16 |
aatatgatcaatttaaactataagaaaaatcaaatattatatagttacgtgcagttatttgcatc-ttataattttatc |
93 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
23203588 |
aatatgaccaatttaaactataagagaaatcaaacattatatagttacttgcaattatttgcatctttataattttatc |
23203510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 23203314 - 23203167
Alignment:
| Q |
219 |
ccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgca-tgaaaaccc |
317 |
Q |
| |
|
|||||||| |||||| ||||| |||||| |||||| ||||||||||||| ||||||||| |||| ||| ||||| |||||||||||| ||||||| | |
|
|
| T |
23203314 |
ccttaatgctggtctatgtttaggggaaagtttgtgaagctcacggaacatgtttttaatgtcaagcgcgaagcgctaaactagtgcgcattgaaaactc |
23203215 |
T |
|
| Q |
318 |
tgccc------tgatgactgcacggagcactataatgtgttgagcccc |
359 |
Q |
| |
|
|||| | ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
23203214 |
cgccctaatattaatgaccgcacggagcactgtaatgtgttgagcccc |
23203167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University