View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_50 (Length: 247)
Name: NF10539_low_50
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 47371122 - 47370889
Alignment:
| Q |
1 |
cttaacaaatcttaatagcatattaaatgattttactttttaataaaattccgtagggacgatgcgtatattataaactttcaatccaacggtggatttt |
100 |
Q |
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| T |
47371122 |
cttaacaaatcttaatagcatattaaatgattttactttttaataaaattccgtagggacgatgcgtatattataaattttcaatccaacggtggatttt |
47371023 |
T |
|
| Q |
101 |
ataaaatttgtattcgttaaaatgttattgagcagtgtaacattgcgtcaatgtaatttgattcttcatgtatagataatttgaaatacatactcatata |
200 |
Q |
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| T |
47371022 |
ataaaatttgtattcgttaaaatgttattgtgcagtgtaacattgcaccaatgtaatttgattcttcatgtatagataatttgaaatacgtactcatata |
47370923 |
T |
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| Q |
201 |
taaatatatatggttaaatatgtttttgatgtcc |
234 |
Q |
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| T |
47370922 |
taaatatatatggttaaatatgtttttgatgtcc |
47370889 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 34575856 - 34575914
Alignment:
| Q |
73 |
ataaactttcaatccaacggtggattttataaaatttgtattcgttaaaatgttattga |
131 |
Q |
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| T |
34575856 |
ataaattttcaatccaactgtgaattttataaaatttatattagttaaaacgttattga |
34575914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 43269837 - 43269896
Alignment:
| Q |
73 |
ataaactttcaatccaacggtggattttataaaatttgtattcgttaaaatgttattgag |
132 |
Q |
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| T |
43269837 |
ataaactttcaatctaatagtagattttacaaaatttgtattcgttaaaacattattgag |
43269896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 28036642 - 28036608
Alignment:
| Q |
196 |
atatataaatatatatggttaaatatgtttttgat |
230 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
28036642 |
atatatatatatatatggttaaatatgtttttgat |
28036608 |
T |
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