View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_51 (Length: 247)
Name: NF10539_low_51
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23289353 - 23289114
Alignment:
| Q |
1 |
ctcgatgatattcggtgttgagatgtggtgtcagaaattgtggttaaattacacaactgcaatatatctatatactataagttggaatttcaaaaggatt |
100 |
Q |
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| T |
23289353 |
ctcgatgatatttggtgttgagacgtggtgtcagaaattgtgtttaaattacacaaatgcaatatatctatatactataagttggaatttcaaaaggatt |
23289254 |
T |
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| Q |
101 |
tttaatttgtagcttatatgtgaatagaatcactaatcaggcataaagtgcatcttacttcttttatttatatataaaagaataataaaactttggaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23289253 |
tttaatttgtagcttatatgtgaatagaatcactaatcaggcataaagtgcatcttacttcttttatttatatataaaagaataataaaactttggaatg |
23289154 |
T |
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| Q |
201 |
tcaaaatatctctatgtataaatattaatattgacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
23289153 |
tcaaaatatctctatgtataaatattaatattgacctttg |
23289114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 23283009 - 23282841
Alignment:
| Q |
1 |
ctcgatgatattcggtgttgagatgtggtgtcagaaattgtggttaaattacacaactgcaatatatctatatactataagttggaatttcaaaaggatt |
100 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| |
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| T |
23283009 |
ctcgatgatatacggtgttgagacgtggtgtcagaaattgtgtttaaattacacaactgcaatatatctatatacaacaagttgga-tttcaaaaggatt |
23282911 |
T |
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| Q |
101 |
tttaatttgtagcttatatgtgaatagaatcactaatcaggcataaagtgcatcttacttcttttattta |
170 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23282910 |
tttaatttgtagcttatatgtgaatataatcactaatcaggcataaagtgcatcttatctcttttattta |
23282841 |
T |
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