View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_56 (Length: 239)
Name: NF10539_low_56
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47551365 - 47551141
Alignment:
| Q |
1 |
aaactggttcaataataagaatataatatctaagttacacatcagccattgattaatcaaagcattct--atcaatattaagaaacataaaaacaattta |
98 |
Q |
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| T |
47551365 |
aaactgattcaataataagaacataatatctaagttacacatcagccattgattaatcaaagcattctcaatcaatattaagaaacataaaaacaattta |
47551266 |
T |
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| Q |
99 |
ccaaccatgtcaacaatatatgtttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatctgctaccctaattcctaactcatgaatt |
198 |
Q |
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| T |
47551265 |
ccaaccaagtcaacaatatatgttccaaacatgcatctgaaagaatgagttaccactaacgcctatttgatctgctaccctaattcctaactcatgaagt |
47551166 |
T |
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| Q |
199 |
ttcccagttaaacaaattaacaagg |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
47551165 |
ttcccagttaaacaaattaacaagg |
47551141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 47538571 - 47538373
Alignment:
| Q |
26 |
atatctaagttacacatcagccattgattaatcaaagcat--tct--atcaatattaagaaacataaaaacaatttaccaaccatgtcaacaatatatgt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
47538571 |
atatctaagttacacatcagccattgattaatcaaaacacagtctgaatcaatattgagaaacataaaaacaatttaccaa----gtcaacaatatatgt |
47538476 |
T |
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| Q |
122 |
ttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatc--tgctaccctaattcctaactcatgaattttcccagttaaacaaattaac |
219 |
Q |
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| T |
47538475 |
tccagacatgcttctggaagaatgagttaccactaaggcctatttgatctatgctaccctaattcttatctcataaattttcccagttaaacgaattaac |
47538376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 47545128 - 47544930
Alignment:
| Q |
26 |
atatctaagttacacatcagccattgattaatcaaagcat--tct--atcaatattaagaaacataaaaacaatttaccaaccatgtcaacaatatatgt |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
47545128 |
atatctaagttacacatcagccattgattaatcaaaacacagtctgaatcaatattgagaaacataaaaacaatttaccaa----gtcaacaatatatgt |
47545033 |
T |
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| Q |
122 |
ttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatc--tgctaccctaattcctaactcatgaattttcccagttaaacaaattaac |
219 |
Q |
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| || |||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||||| || ||||| ||||||||||||||||| ||||||| |
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| T |
47545032 |
tccagacatgcttctggaagaatgagttaccactaaggcctatttgatctatgctaccctaattcttatctcataaattttcccagttaaacgaattaac |
47544933 |
T |
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