View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_59 (Length: 231)

Name: NF10539_low_59
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_59
NF10539_low_59
[»] chr6 (15 HSPs)
chr6 (1-215)||(23289641-23289855)
chr6 (1-110)||(23283301-23283410)
chr6 (116-215)||(23283443-23283542)
chr6 (1-89)||(23251697-23251782)
chr6 (1-91)||(23257670-23257760)
chr6 (1-91)||(23266231-23266315)
chr6 (117-214)||(23251795-23251892)
chr6 (147-195)||(23506635-23506683)
chr6 (132-183)||(23391241-23391292)
chr6 (148-195)||(23633978-23634025)
chr6 (17-89)||(23247298-23247370)
chr6 (150-214)||(23257804-23257868)
chr6 (147-180)||(23586943-23586976)
chr6 (149-189)||(23506799-23506839)
chr6 (147-179)||(23583060-23583092)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 23289641 - 23289855
Alignment:
Q  1 tgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttgctcttctttttcgacttccacacaaaacatattcaacacttcttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23289641 tgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttcctcttctttttcgacttccacacaaaacatattcaacacttcttcc 23289740  T
Q  101 tcttcttccaccgcaacgacaacagccacaaccgtgtcaatgacagtagtcattaaagtcttgtctggtctgaaagcctcagcagcttctccagctgccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23289741 tcttcttccaccgcaacgacaacagccacaaccgtgtcaatgccagtagtcattaaagtcttgtctggtctgaaagcctcagcggcttctccagctgccc 23289840  T
Q  201 tttgaatgtcttttg 215  Q
    |||||||||||||||    
T  23289841 tttgaatgtcttttg 23289855  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23283301 - 23283410
Alignment:
Q  1 tgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttgctcttctttttcgacttccacacaaaacatattcaacacttcttcc 100  Q
    ||||||||||||||  ||||||||  |||||| ||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  23283301 tgtaggggacattaacgccatattcctccacatctctgacatattcaacacttcctcttctttttcgacttccacacaaaacatattcaacacttcctcc 23283400  T
Q  101 tcttcttcca 110  Q
    ||||||||||    
T  23283401 tcttcttcca 23283410  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 23283443 - 23283542
Alignment:
Q  116 acgacaacagccacaaccgtgtcaatgacagtagtcattaaagtcttgtctggtctgaaagcctcagcagcttctccagctgccctttgaatgtcttttg 215  Q
    ||||| ||||||||||| ||||||||| |  |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  23283443 acgacgacagccacaacggtgtcaatgtcgttagtcattaaagtcttgtctggtctgaaagcctcggcggcttctgcagctgccctttgaatgtcttttg 23283542  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23251697 - 23251782
Alignment:
Q  1 tgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttgctcttctttttcgacttccacacaaaacatattca 89  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||   ||||||||| |||| |||||||||||    
T  23251697 tgtaggggacattagtgccatattcctccacaactctggcatattcaacacttcctcttc---ttcgacttcaacacgaaacatattca 23251782  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23257670 - 23257760
Alignment:
Q  1 tgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttgctcttctttttcgacttccacacaaaacatattcaac 91  Q
    ||||||||||||||||||||||||  || |||| ||| |||||||||||| || ||  |||| ||||||||||||||||||||||||||||    
T  23257670 tgtaggggacattagtgccatattcctcaacaattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaac 23257760  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23266231 - 23266315
Alignment:
Q  1 tgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttgctcttctttttcgacttccacacaaaacatattcaac 91  Q
    ||||||||||||||||||||||||  |||| |||||  |||||||||||| || ||||||||      |||||||||||||||||||||||    
T  23266231 tgtaggggacattagtgccatattcctccaaaactccggcatattcaacatttcctcttctt------cttccacacaaaacatattcaac 23266315  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 23251795 - 23251892
Alignment:
Q  117 cgacaacagccacaaccgtgtcaatgacagtagtcattaaagtcttgtctggtctgaaagcctcagcagcttctccagctgccctttgaatgtctttt 214  Q
    |||||||||| ||||| ||||||||| || | ||||||||||| ||||||||||| ||||| || || |||| |  ||||||| ||||||| ||||||    
T  23251795 cgacaacagctacaacggtgtcaatgtcactggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatctttt 23251892  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 23506635 - 23506683
Alignment:
Q  147 tagtcattaaagtcttgtctggtctgaaagcctcagcagcttctccagc 195  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  23506635 tagtcgttaaagtcttgtctggtctgaaagcctcagtagcttctgcagc 23506683  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 23391241 - 23391292
Alignment:
Q  132 ccgtgtcaatgacagtagtcattaaagtcttgtctggtctgaaagcctcagc 183  Q
    ||||||||||| || |||| ||| ||||||||||||||||||||||||||||    
T  23391241 ccgtgtcaatgtcattagtaattgaagtcttgtctggtctgaaagcctcagc 23391292  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 23633978 - 23634025
Alignment:
Q  148 agtcattaaagtcttgtctggtctgaaagcctcagcagcttctccagc 195  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  23633978 agtcgttaaagtcttgtctggtctgaaagcctcggcagcttctgcagc 23634025  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 23247298 - 23247370
Alignment:
Q  17 gccatatttttccacaactcttgcatattcaacacttgctcttctttttcgacttccacacaaaacatattca 89  Q
    ||||||||  ||||||||||| |||||||||||| || ||| | ||  || ||||||||||||||||||||||    
T  23247298 gccatattcctccacaactctggcatattcaacatttcctcctgttcatcaacttccacacaaaacatattca 23247370  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 23257804 - 23257868
Alignment:
Q  150 tcattaaagtcttgtctggtctgaaagcctcagcagcttctccagctgccctttgaatgtctttt 214  Q
    |||||||||||||||||||||| ||||| || ||||||||  |||| ||| ||||||| ||||||    
T  23257804 tcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatctttt 23257868  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 23586943 - 23586976
Alignment:
Q  147 tagtcattaaagtcttgtctggtctgaaagcctc 180  Q
    |||||| |||||||||||||||||||||||||||    
T  23586943 tagtcaataaagtcttgtctggtctgaaagcctc 23586976  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 23506799 - 23506839
Alignment:
Q  149 gtcattaaagtcttgtctggtctgaaagcctcagcagcttc 189  Q
    ||||||| ||||||| |||||||||| ||||||||||||||    
T  23506799 gtcattacagtcttgcctggtctgaatgcctcagcagcttc 23506839  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 23583060 - 23583092
Alignment:
Q  147 tagtcattaaagtcttgtctggtctgaaagcct 179  Q
    |||||| ||||||||||||||||||||||||||    
T  23583060 tagtcaataaagtcttgtctggtctgaaagcct 23583092  T

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