View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_low_6 (Length: 445)

Name: NF10539_low_6
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_low_6
NF10539_low_6
[»] chr1 (6 HSPs)
chr1 (19-434)||(28079551-28079965)
chr1 (351-421)||(41092669-41092739)
chr1 (359-413)||(42606287-42606341)
chr1 (360-413)||(27120882-27120935)
chr1 (352-421)||(41087928-41087997)
chr1 (357-413)||(3400010-3400066)
[»] chr5 (1 HSPs)
chr5 (351-413)||(5539099-5539161)
[»] chr2 (1 HSPs)
chr2 (352-421)||(28388705-28388774)
[»] chr8 (2 HSPs)
chr8 (357-421)||(38810133-38810197)
chr8 (359-404)||(33933558-33933603)
[»] chr4 (1 HSPs)
chr4 (357-434)||(20634512-20634589)
[»] chr3 (3 HSPs)
chr3 (352-425)||(13411407-13411480)
chr3 (354-422)||(7851118-7851186)
chr3 (357-413)||(20000093-20000149)
[»] chr6 (1 HSPs)
chr6 (352-413)||(22749247-22749308)
[»] chr7 (1 HSPs)
chr7 (357-421)||(47405107-47405171)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 434
Target Start/End: Original strand, 28079551 - 28079965
Alignment:
Q  19 catataaagttgttgatcctttgataagttctgcacatgttgaagttaaacaagaaagttgtagatgagagttgcttgatatctacttaattctacaaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  28079551 catataaagttgttgatcctttgataagttctgcacatgttgaaattaaacaaaaaagttgcagatgagagttgcttgatatctacttaattctacaaaa 28079650  T
Q  119 tggttgcaatgnnnnnnnnnnnnnnnnnnnnnnnnngaaggaatctcaagtcaatgattatagaaaccgataccaacattccaaaaatcacaccttcaca 218  Q
    |||||||||||                         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28079651 tggttgcaatgatttttattttattattttgtttttgaaggaatctcaagtcaatgatgatagaaaccgataccaacattccaaaaatcacaccttcaca 28079750  T
Q  219 ccaagttccgtaataaattactttgtgacgcatactatgtaccaagttaatgcatcagtgtcttnnnnnnnnnnnngttaatgcagtagttaacttttta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  28079751 ccaagttccgtaataaattactttgtgacgcatactatgtaccaagttaatgcatcagtgtctt-aaaaaaaatgagttaatgcagtagttaacttttta 28079849  T
Q  319 tccagagggaagggctcgagttggtacatcacttgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagc 418  Q
    || ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||     
T  28079850 tctagagggaagggctcgagttggtatatcacttgtggactggtatggagaaccataccacttggactctactgtatattgactattcaatatgtctagt 28079949  T
Q  419 tcagtttaaccgttca 434  Q
    |||| |||||||||||    
T  28079950 tcagcttaaccgttca 28079965  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 41092739 - 41092669
Alignment:
Q  351 ttgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 421  Q
    ||||| |||||||| ||| |||||||||| |||||| |||| || ||||||||||||| ||||||||||||    
T  41092739 ttgtggactggtatagaggaccataccacatggactttactatacattgactattcaacatgtccagctca 41092669  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 42606287 - 42606341
Alignment:
Q  359 tggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 413  Q
    |||||| ||| ||||||||||||||||||| || || ||||||||||||||||||    
T  42606287 tggtatagaggaccataccacgtggactctcctatacattgactattcaatatgt 42606341  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 27120882 - 27120935
Alignment:
Q  360 ggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 413  Q
    ||||||||| ||||||||||||||||||| || || ||||||||||||| ||||    
T  27120882 ggtatggaggaccataccacgtggactctcctttacattgactattcaacatgt 27120935  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 41087997 - 41087928
Alignment:
Q  352 tgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 421  Q
    |||| |||||||| ||| |||||||||| |||||| |||| || ||||||||||||| ||||||| ||||    
T  41087997 tgtggactggtatagaggaccataccacatggactttactatacattgactattcaacatgtccaactca 41087928  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 3400010 - 3400066
Alignment:
Q  357 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 413  Q
    |||||||||||| |||||||||||||||||||  | || ||||||||||||| ||||    
T  3400010 actggtatggaggaccataccacgtggactcttatatacattgactattcaacatgt 3400066  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 5539161 - 5539099
Alignment:
Q  351 ttgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 413  Q
    ||||| |||||||||||| ||||||||||||||||||| || || ||||||||||||| ||||    
T  5539161 ttgtggactggtatggaggaccataccacgtggactctcctatacattgactattcaacatgt 5539099  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 28388705 - 28388774
Alignment:
Q  352 tgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 421  Q
    ||||||||||||| ||| |||||||||| |||| | || | |||||||||||||||||||||| ||||||    
T  28388705 tgtgaactggtatagaggaccataccacatggattttattatatattgactattcaatatgtctagctca 28388774  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 38810197 - 38810133
Alignment:
Q  357 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 421  Q
    |||||||||||| |||||| |||||||||||| || || ||||||||||||| |||| |||||||    
T  38810197 actggtatggaggaccatatcacgtggactctcctatacattgactattcaacatgtacagctca 38810133  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 33933603 - 33933558
Alignment:
Q  359 tggtatggagaaccataccacgtggactctactgtatattgactat 404  Q
    ||||||||| |||||||||||||||||||| || || |||||||||    
T  33933603 tggtatggaaaaccataccacgtggactctcctatacattgactat 33933558  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 20634512 - 20634589
Alignment:
Q  357 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagtttaaccgttca 434  Q
    |||||||||||| |||||||||| |||||||| || || ||||| ||||||| |||| || |||||||| | ||||||    
T  20634512 actggtatggaggaccataccacatggactctcctatacattgaatattcaacatgtacaactcagtttgatcgttca 20634589  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 425
Target Start/End: Complemental strand, 13411480 - 13411407
Alignment:
Q  352 tgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagttt 425  Q
    |||| |||||||||||| | ||||||||||||||||| || ||||||||||| ||||  ||| || ||||||||    
T  13411480 tgtggactggtatggaggatcataccacgtggactctcctatatattgactaatcaacgtgtacaactcagttt 13411407  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 7851186 - 7851118
Alignment:
Q  354 tgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcag 422  Q
    ||||||| ||||||||| ||| ||||||||||||| || || ||||||||||||| ||||  |||||||    
T  7851186 tgaactgatatggagaatcatgccacgtggactctcctatagattgactattcaacatgtatagctcag 7851118  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 20000093 - 20000149
Alignment:
Q  357 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 413  Q
    |||||||||||| ||||||||||||||||||   | || ||||||||||||| ||||    
T  20000093 actggtatggaggaccataccacgtggactcctatatacattgactattcaacatgt 20000149  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 22749308 - 22749247
Alignment:
Q  352 tgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 413  Q
    |||| ||| |||||||| |||||| ||||||||||||  | |||||||||||||||| ||||    
T  22749308 tgtggactagtatggaggaccatatcacgtggactctcttttatattgactattcaacatgt 22749247  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 47405171 - 47405107
Alignment:
Q  357 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 421  Q
    |||||||| ||| |||||||||| || ||| |||| || ||||||||||||| || |||||||||    
T  47405171 actggtatagaggaccataccacatgaactttactatacattgactattcaacatatccagctca 47405107  T

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