View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_62 (Length: 227)
Name: NF10539_low_62
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 28079971 - 28080189
Alignment:
| Q |
4 |
cacgagctccatcctttagcatgtctagcccagcttgaccatttaggtcattcctaactcagcttgaccattcagtcatgtctaactcagcttcatcctt |
103 |
Q |
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| T |
28079971 |
cacgagcttcatcctttagcatgtctagctcagcttgaccatttaggtcattcctaactcagcttgaccattcagtcatgcctagctcagcttcatcctt |
28080070 |
T |
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| Q |
104 |
cagtatgactagctcatcttgaccattcagatcatgcctagttcagctccacaattcaacatgtcaaactcaattccaccgtgcagcatgcctagatcgg |
203 |
Q |
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| T |
28080071 |
cggtatgactagctcatcttgaccattcaggtcatgcctagttcagctctacaattcaacatgtcaagctcaattccaccgtgcagcatgcctagatcgg |
28080170 |
T |
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| Q |
204 |
cttgattgttcatctcact |
222 |
Q |
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||||||||||||| ||||| |
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| T |
28080171 |
cttgattgttcatgtcact |
28080189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 10041520 - 10041586
Alignment:
| Q |
100 |
ccttcagtatgactagctcatcttgaccattcagatcatgcctagttcagctccacaattcaacatg |
166 |
Q |
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||||||| ||| |||||| | ||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
10041520 |
ccttcagcatgtctagcttaacttgaccattcagatcatgcctaactcaactccacaattcaacatg |
10041586 |
T |
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