View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_63 (Length: 227)
Name: NF10539_low_63
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_63 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37361488 - 37361714
Alignment:
| Q |
1 |
tattgatgaatagtacaaccgagttactttcttatatatttttatgcaattatgtgcttgcatgcattatgatatattctgatcaatttattattatctc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361488 |
tattgatgaatagtacaactgagttactttcttatatatttttatgcaattatgtgcttgcatgcattatgatatattctgatcaatttattattatctc |
37361587 |
T |
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| Q |
101 |
acagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagatcgacaatgccacatatgaaattatcacgaatcctacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361588 |
acagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagatcgacaatgccacatatgaaattatcacgaatcctacc |
37361687 |
T |
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| Q |
201 |
ttacttgagattaatcatttcagctca |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37361688 |
ttacttgagattaatcatttcagctca |
37361714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37366573 - 37366347
Alignment:
| Q |
1 |
tattgatgaatagtacaaccgagttactttcttatatatttttatgcaattatgtgcttgcatgcattatgatatattctgatcaatttattattatctc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37366573 |
tattgatgaatagtacaactgagttactttcttatatatttttatgcaattatgtgcttgcatgcattatgatatattctgatcaatttattattatctc |
37366474 |
T |
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| Q |
101 |
acagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagatcgacaatgccacatatgaaattatcacgaatcctacc |
200 |
Q |
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| T |
37366473 |
acagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagatcgacaatgccacatatgaaattatcacgaatcctacc |
37366374 |
T |
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| Q |
201 |
ttacttgagattaatcatttcagctca |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37366373 |
ttacttgagattaatcatttcagctca |
37366347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 37383766 - 37383907
Alignment:
| Q |
85 |
aatttattattatctcacagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagatcgacaatgccacatatgaaat |
184 |
Q |
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|||| |||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |
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| T |
37383766 |
aattcattattatatcacagatgactctgtgggctttggcaaaatctccccttatgtatggaggcgatgtgcggagaatcgatccggccacatatgaaat |
37383865 |
T |
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| Q |
185 |
tatcacgaatcctaccttacttgagattaatcatttcagctc |
226 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||| |
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| T |
37383866 |
tatcacgaatccaaccctactagagattaatcatttcagctc |
37383907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 199
Target Start/End: Complemental strand, 37408878 - 37408730
Alignment:
| Q |
52 |
atgtgcttgcatgcattatgatatattctga-tcaatttattattatctcacagatgactttgtgggctatggcaaagtctccccttatgtatggaggcg |
150 |
Q |
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||||| ||||||||||||||||| | ||||| | ||| ||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
37408878 |
atgtgattgcatgcattatgatagactctgagtggattcattgttatctcatagatgactttatgggctttggcaaagtctccccttatgtatggaggcg |
37408779 |
T |
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| Q |
151 |
atgtgaggaagatcgacaatgccacatatgaaattatcacgaatcctac |
199 |
Q |
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|| || ||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
37408778 |
atatgcggaagatcgaccctgccacatacgaaattatcacgaatcctac |
37408730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 37376404 - 37376545
Alignment:
| Q |
85 |
aatttattattatctcacagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagatcgacaatgccacatatgaaat |
184 |
Q |
| |
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|||| |||||||| |||||||||||| |||||||| | ||||| ||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
37376404 |
aattcattattatatcacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgcggaggatcgatcctgccacatatgaaat |
37376503 |
T |
|
| Q |
185 |
tatcacgaatcctaccttacttgagattaatcatttcagctc |
226 |
Q |
| |
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||| |||||||| ||| |||| |||||||||||||||||||| |
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| T |
37376504 |
tatgacgaatccgaccctactagagattaatcatttcagctc |
37376545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 41228792 - 41228617
Alignment:
| Q |
52 |
atgtgcttgcatgcattatgatatattctga-tcaatttattattatctcacagatgactttgtgggctatggcaaagtctccccttatgtatggaggcg |
150 |
Q |
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||||| ||||||||||||||||| ||| ||| | |||| ||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||||| | |
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| T |
41228792 |
atgtgattgcatgcattatgatagattttgagtgaattcattgttatctcatagatgactttatgggctctggcaaagtctccccttatgtatggaggtg |
41228693 |
T |
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| Q |
151 |
atgtgaggaagatcgacaatgccacatatgaaattatcacgaatcctaccttacttgagattaatcatttcagctc |
226 |
Q |
| |
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| || ||||||||||| ||||||||||||||||||||| ||||||||| | || || |||||| |||||||||| |
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| T |
41228692 |
acatgcggaagatcgaccctgccacatatgaaattatcacaaatcctaccgtgctagaaattaattatttcagctc |
41228617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 39246281 - 39246344
Alignment:
| Q |
100 |
cacagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagat |
163 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
39246281 |
cacagatgaccctgtgggcaatggcaaagtctccccttatgtatgggggcgatgtacggaagat |
39246344 |
T |
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