View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_low_9 (Length: 421)
Name: NF10539_low_9
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 37 - 404
Target Start/End: Original strand, 55076966 - 55077333
Alignment:
| Q |
37 |
acaatagtcaatgttgataatttataggatgacgtcggctgcttcggggagttgttaagtgcttttagtggattaaagaaaccaatgtggatgctaatga |
136 |
Q |
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| T |
55076966 |
acaattgtcaatgtttgtaatttataggatgacgtcggctgcttcggggagttgttaagtgcttttagtggattaaagaaaccaatgtggatgctaatga |
55077065 |
T |
|
| Q |
137 |
tagtaaccgctataaattgggtagcatggttcccatttttcttgttcgacactgattggatgggtcgtgaagtgtatggtggcaatgttggagataatac |
236 |
Q |
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| T |
55077066 |
tagtaaccgctataaattgggtagcatggttcccatttttcttgttcgatactgattggatgggtcgtgaagtgtatggtggcaatgttggagataatac |
55077165 |
T |
|
| Q |
237 |
ctatgccgctggtgtgcgcgccggagcgttaggactaatgattaatgcatttgtgcttgctataatgtcaatgggggttgaaccgttggggcgtttcatt |
336 |
Q |
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| T |
55077166 |
ctatgccgctggtgtgcgcgcgggagcgttgggactaatgattaatgcatttgtgcttgctataatgtcgttgggggttgaaccgttggggcgtttcatt |
55077265 |
T |
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| Q |
337 |
ggcggagctaagaggctatggggaattgtgaatattattctggctattgcacttgctatgacggttgt |
404 |
Q |
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| T |
55077266 |
ggcggagctaagaggctatgggggattgtgaatattattctggctattgcacttgctatgacggttgt |
55077333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 42340914 - 42340970
Alignment:
| Q |
153 |
ttgggtagcatggttcccatttttcttgttcgacactgattggatgggtcgtgaagt |
209 |
Q |
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| T |
42340914 |
ttgggttgcatggttcctattttctttattcaacactgattggatgggccgtgaagt |
42340970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 401
Target Start/End: Complemental strand, 15124933 - 15124653
Alignment:
| Q |
121 |
atgtggatgctaatgatagtaaccgctataaattgggtagcatggttcccatttttcttgttcgacactgattggatgggtcgtgaagtgtatggtggca |
220 |
Q |
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| T |
15124933 |
atgtggatgctgatgttggttaccgcgatcaattgggttgcatggtttccgttcttcttgttcgacactgattggatgggtcaagaagtatacggtggca |
15124834 |
T |
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| Q |
221 |
atgttggagataatacctatgccgctggtgtgcgcgccggagcgttaggactaatgattaatgcatttgtgcttgctataatgtcaatgggggttgaacc |
320 |
Q |
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| T |
15124833 |
aaccaggagataatgcatatagcaaaggagtgcgtgttggagcgttgggactaatgctgaatgcttttgtgcttgcttttatgtcgttggcagtggaacc |
15124734 |
T |
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| Q |
321 |
gttggggcgtttcattggcggagctaagaggctatggggaattgtgaatattattctggctattgcacttgctatgacggt |
401 |
Q |
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| T |
15124733 |
attagggcgtttagttgggggcgcgaagagactttgggggattgtgaatatcattcttgctattggtctcgctatgacggt |
15124653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 10932546 - 10932650
Alignment:
| Q |
108 |
attaaagaaaccaatgtggatgctaatgatagtaaccgctataaattgggtagcatggttcccatttttcttgttcgacactgattggatgggtcgtgaa |
207 |
Q |
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| T |
10932546 |
attaaagagaccaatgtggatattgatgttagtaacagccgtgaactggatcgcgtggttcccgttcttcttgttcgacactgactggatgggccgtgag |
10932645 |
T |
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| Q |
208 |
gtgta |
212 |
Q |
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||||| |
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| T |
10932646 |
gtgta |
10932650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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