View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1053_high_3 (Length: 337)
Name: NF1053_high_3
Description: NF1053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1053_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 33757629 - 33757951
Alignment:
| Q |
4 |
cataatattatgcagactgtaggcatttgttactattaacgtggtcaatattagcttagctttccctcacattatgaaaaataaacgccggatctgtgat |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33757629 |
cataatattatgcagactgtaggcgtttgttactattaacgtggtcaatattagcttatctttccctcacattatgaaaaacaaacgccggatctgtgat |
33757728 |
T |
|
| Q |
104 |
cctttctattgaaccacttctttcattctgggcatgggcacatcgtcggagagccaccaccggtgactttccggtcatcgtctccgacttcttctattga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
33757729 |
cctttctattgaaccacttctttcattctgggcatggacacatcgtcggagagccaccgccggtgactttccggtcatcttctccggcttcttctattga |
33757828 |
T |
|
| Q |
204 |
nnnnnnnacaaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttccttattcat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33757829 |
tttttttacaaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttacttattcat |
33757928 |
T |
|
| Q |
304 |
atagatctaattcaacaattcat |
326 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33757929 |
atagatctaattcaacaattcat |
33757951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 198495 - 198415
Alignment:
| Q |
246 |
aaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttccttattcatatagatctaattcaacaattcat |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
198495 |
aaaccaaacaactagaaaagaaaataaaaacattaaatttgcatttttacttattcatatagatctgattccacaattcat |
198415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 45026505 - 45026827
Alignment:
| Q |
4 |
cataatattatgcagactgtaggcatttgttactattaacgtggtcaatattagcttagctttccctcacattatgaaaaataaacgccggatctgtgat |
103 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45026505 |
cataatattatgcagactgtaagcgtttgttactattaacgtggtcaatattagcttatctttccctcacattatgaaaaacaaacgccggatctgtgat |
45026604 |
T |
|
| Q |
104 |
cctttctattgaaccacttctttcattctgggcatgggcacatcgtcggagagccaccaccggtgactttccggtcatcgtctccgacttcttctattga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||| ||||| |
|
|
| T |
45026605 |
cctttctattgaaccacttctttcattctgggcatggacacatcgtcggagagccaccgccggtgactttccgatcatcttctccggcttcttcaattga |
45026704 |
T |
|
| Q |
204 |
nnnnnnnacaaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttccttattcat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
45026705 |
tttttttacaaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaatattacatttgcatttttacttattcat |
45026804 |
T |
|
| Q |
304 |
atagatctaattcaacaattcat |
326 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
45026805 |
atagatctaattcaacaattcat |
45026827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 32667164 - 32667277
Alignment:
| Q |
213 |
aaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttccttattcatatagatcta |
312 |
Q |
| |
|
||||||| |||| |||| ||| |||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| | |
|
|
| T |
32667164 |
aaagcttgcaattggcccttttccactcaatccaaaccaaacaactaaaaaagaaaataaaaacattacatttgtatttttacttattcatatagatatg |
32667263 |
T |
|
| Q |
313 |
attcaacaattcat |
326 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
32667264 |
attccacaattcat |
32667277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University