View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1053_low_3 (Length: 350)

Name: NF1053_low_3
Description: NF1053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1053_low_3
NF1053_low_3
[»] chr4 (2 HSPs)
chr4 (9-340)||(10187457-10187788)
chr4 (65-243)||(28933230-28933407)
[»] chr2 (1 HSPs)
chr2 (152-340)||(35120543-35120731)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 10187457 - 10187788
Alignment:
Q  9 agtgaagacaacgagccgagatgtacgttctactcctgtggtttttattctacttttttctgcctgcattttgttctttattaagcattctgcatgttgc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10187457 agtgaagacaacgagccgagatgtacgttctactcctgtggtttttattctacttttttctgcctgcattttgttctttattaagcattctgcatgttgc 10187556  T
Q  109 ctcggggcccttaaaaaatgttggtgttctgtgcgctaatccatggtcgtggttagagaaagttaatttttcgtctatcttctgaatcaccttttattgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10187557 ctcggggcccttaaaaaatgttggtgttctgtgcgctaatccatggtcgtggttagagaaagttaatttttcgtctatcttctgaatcaccttttattgg 10187656  T
Q  209 cttggtattttacatgtttaatgaaattggcagatagtagataacgtgctggatataattgacagaattgacaaccccattattgataaaatacaaaggt 308  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10187657 cttggtattttacatgtttaatgaaactggcagatagtagatgacgtgcgggatataattgacagaattgacaaccccattattgataaaatacaaaggt 10187756  T
Q  309 atgtttctcagtttctcttgttcttagaatta 340  Q
    ||||||||||||||||||||||||||||||||    
T  10187757 atgtttctcagtttctcttgttcttagaatta 10187788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 28933230 - 28933407
Alignment:
Q  65 tttctgcctgcattttgttctttattaagcattctgcatgttgcctcggggcccttaaaaaatgttggtgttctgtgcgctaatccatggtcgtggttag 164  Q
    ||||| ||||||||||||||| ||||| | |||||||| ||| |||| || ||| |||||||| |||||||| |||||  |||| |||| | |||| |||    
T  28933230 tttctacctgcattttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatattggtgttgtgtgc--taattcatgattgtggatag 28933327  T
Q  165 agaaagttaatttt-tcgtctatcttctgaatcaccttttattggcttggtattttacatgtttaatgaaattggcagat 243  Q
    | ||  || ||||| || |||| |||  |||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  28933328 aaaatttttattttgtcatctaactttcgaatcaccttttattggcctggtattttacatgtctaatgaaattggcagat 28933407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 152 - 340
Target Start/End: Complemental strand, 35120731 - 35120543
Alignment:
Q  152 tggtcgtggttagagaaagttaatttttcgtctatcttctgaatcaccttttattggcttggtattttacatgtttaatgaaattggcagatagtagata 251  Q
    ||||| ||| |||||||| |  ||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||     
T  35120731 tggtcatggatagagaaaatatatttttcatctaacttctgaatcacctttttttggcttggtattttacatttttaatgaaattggcagatggtagatg 35120632  T
Q  252 acgtgctggatataattgacagaattgacaaccccattattgataaaatacaaaggtatgtttctcagtttctcttgttcttagaatta 340  Q
    || ||| ||||| |||||| | || |||||||||||||||| | ||||||||   |||||| |||||||||||||||||||||||||||    
T  35120631 acttgcgggatagaattgaaacaagtgacaaccccattattaacaaaatacaggagtatgtctctcagtttctcttgttcttagaatta 35120543  T

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