View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1053_low_4 (Length: 337)

Name: NF1053_low_4
Description: NF1053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1053_low_4
NF1053_low_4
[»] chr4 (2 HSPs)
chr4 (4-326)||(33757629-33757951)
chr4 (246-326)||(198415-198495)
[»] chr7 (1 HSPs)
chr7 (4-326)||(45026505-45026827)
[»] chr8 (1 HSPs)
chr8 (213-326)||(32667164-32667277)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 33757629 - 33757951
Alignment:
Q  4 cataatattatgcagactgtaggcatttgttactattaacgtggtcaatattagcttagctttccctcacattatgaaaaataaacgccggatctgtgat 103  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  33757629 cataatattatgcagactgtaggcgtttgttactattaacgtggtcaatattagcttatctttccctcacattatgaaaaacaaacgccggatctgtgat 33757728  T
Q  104 cctttctattgaaccacttctttcattctgggcatgggcacatcgtcggagagccaccaccggtgactttccggtcatcgtctccgacttcttctattga 203  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  33757729 cctttctattgaaccacttctttcattctgggcatggacacatcgtcggagagccaccgccggtgactttccggtcatcttctccggcttcttctattga 33757828  T
Q  204 nnnnnnnacaaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttccttattcat 303  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33757829 tttttttacaaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttacttattcat 33757928  T
Q  304 atagatctaattcaacaattcat 326  Q
    |||||||||||||||||||||||    
T  33757929 atagatctaattcaacaattcat 33757951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 198495 - 198415
Alignment:
Q  246 aaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttccttattcatatagatctaattcaacaattcat 326  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||    
T  198495 aaaccaaacaactagaaaagaaaataaaaacattaaatttgcatttttacttattcatatagatctgattccacaattcat 198415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 45026505 - 45026827
Alignment:
Q  4 cataatattatgcagactgtaggcatttgttactattaacgtggtcaatattagcttagctttccctcacattatgaaaaataaacgccggatctgtgat 103  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  45026505 cataatattatgcagactgtaagcgtttgttactattaacgtggtcaatattagcttatctttccctcacattatgaaaaacaaacgccggatctgtgat 45026604  T
Q  104 cctttctattgaaccacttctttcattctgggcatgggcacatcgtcggagagccaccaccggtgactttccggtcatcgtctccgacttcttctattga 203  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||| |||||    
T  45026605 cctttctattgaaccacttctttcattctgggcatggacacatcgtcggagagccaccgccggtgactttccgatcatcttctccggcttcttcaattga 45026704  T
Q  204 nnnnnnnacaaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttccttattcat 303  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  45026705 tttttttacaaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaatattacatttgcatttttacttattcat 45026804  T
Q  304 atagatctaattcaacaattcat 326  Q
    |||||||||||||||||||||||    
T  45026805 atagatctaattcaacaattcat 45026827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 32667164 - 32667277
Alignment:
Q  213 aaagcttacaatctgccccttttcacttactccaaaccaaacaactagaaaagaaaataaaaacattacatttgcatttttccttattcatatagatcta 312  Q
    ||||||| ||||  |||| ||| |||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |     
T  32667164 aaagcttgcaattggcccttttccactcaatccaaaccaaacaactaaaaaagaaaataaaaacattacatttgtatttttacttattcatatagatatg 32667263  T
Q  313 attcaacaattcat 326  Q
    |||| |||||||||    
T  32667264 attccacaattcat 32667277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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