View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1053_low_7 (Length: 271)
Name: NF1053_low_7
Description: NF1053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1053_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 23018838 - 23019070
Alignment:
| Q |
30 |
gatatgatatacaatcgagacattattgatatagttaaaaatatagagttgaatctgagatacttatacaaatccaatggttccctcgtggtcaataaaa |
129 |
Q |
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| T |
23018838 |
gatatgatatacaatcgagacattattgatatagttaaaaatatagagttgaatctgagatacttatacaaatccaatggttccctcgtggtcaataaaa |
23018937 |
T |
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| Q |
130 |
aatgctgttatgtccttttccatggaaagtaaacgagagggacattttggaagcataatacgtgtnnnnnnnnnnnnnnnnnnnnngttatttaattaga |
229 |
Q |
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| T |
23018938 |
aatgctgttatgtccttttccatggaaagtaaacgagaggaacattttggaagcataatacgtgtcaaaaattacaaaacaaaaaagttatttaattaga |
23019037 |
T |
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| Q |
230 |
acgtatacactgaagttactaattcagaataat |
262 |
Q |
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| T |
23019038 |
acgtatacactgaagttactaattcagaataat |
23019070 |
T |
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