View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1053_low_8 (Length: 252)
Name: NF1053_low_8
Description: NF1053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1053_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 1674117 - 1674259
Alignment:
| Q |
101 |
taatagagtatattgtaaagtcta-atatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagttagttacgg |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |
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| T |
1674117 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtgacaagtttgttactg |
1674216 |
T |
|
| Q |
200 |
attcatttcattctttgctatactatataaggctagctctctg |
242 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1674217 |
attcatttcattccttgctatactatataaggctagctctctg |
1674259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 1678694 - 1678836
Alignment:
| Q |
101 |
taatagagtatattgtaaagtcta-atatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagttagttacgg |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | |
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| T |
1678694 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaattgtgctgatgtggcaagtttgttactg |
1678793 |
T |
|
| Q |
200 |
attcatttcattctttgctatactatataaggctagctctctg |
242 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1678794 |
attcatttcattccttgctatactatataaggctagctctctg |
1678836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 45493358 - 45493499
Alignment:
| Q |
101 |
taatagagtatattgtaaagtcta-atatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagttagttacgg |
199 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
45493358 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagtttgttactg |
45493457 |
T |
|
| Q |
200 |
attcatttcattctttgctatactatataaggctagctctctg |
242 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
45493458 |
attcatttcattc-ctgctatactatataaggctagctctctg |
45493499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 45497921 - 45498062
Alignment:
| Q |
101 |
taatagagtatattgtaaagtcta-atatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagttagttacgg |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
45497921 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagtttgttactg |
45498020 |
T |
|
| Q |
200 |
attcatttcattctttgctatactatataaggctagctctctg |
242 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
45498021 |
attcatttcattc-ctgctatactatataaggctagctctctg |
45498062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23019054 - 23019155
Alignment:
| Q |
1 |
tactaattcagaataatgctagcaactagcactactctattacttcaacataaaacatatatgaacctcttatcaaatctcaacaaggagagaataagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23019054 |
tactaattcagaataatgctagcaactagcactactctattacttcaacataaaacatatatgaaccccttatcaaatctcaacaaggagagaataagaa |
23019153 |
T |
|
| Q |
101 |
ta |
102 |
Q |
| |
|
|| |
|
|
| T |
23019154 |
ta |
23019155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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