View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_high_3 (Length: 299)
Name: NF10540_high_3
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 27365353 - 27365064
Alignment:
| Q |
3 |
ccatgattattgctttcttcctgtgttgtcgcacgcacacctttcttcctcagaggaacctttacgttttgcaggtttacgcttcttcataaaactgcat |
102 |
Q |
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| T |
27365353 |
ccatgattattgctttcttcatgtgttgtcgcacgcacacctttcttcctcagagaaacctttatgttttgcaggtttatgcttccccataaaactgcac |
27365254 |
T |
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| Q |
103 |
gtgttttgcatgttcattcttcttcagaaatcagaagtattgagagttcta------tccaattaatttttccagttcatcgatgttgtgtttgctcttc |
196 |
Q |
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| T |
27365253 |
gtgttttgcatgttcattcttcttcagaaatcagaagtattgagagttctacttctatccaattaatttttccagttcatcgatgttgtgtttgctcttc |
27365154 |
T |
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| Q |
197 |
atcttctactccattcatttaaggaaaaactccatccaatcatgaaattaaattaatttaaataatggtatttcataaaaattgttgcct |
286 |
Q |
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| T |
27365153 |
atcttctactccattcatttaaggaaaaactccatccaatcatgaaattaaattaatttaaataatggtatttcataaaaattgctgcct |
27365064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 43104591 - 43104303
Alignment:
| Q |
3 |
ccatgattattgctttcttcctgtgttgtcgcacgcacacctttcttcctcagaggaacctttacgttttgcaggtttacgcttcttcataaaactgcat |
102 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
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| T |
43104591 |
ccatgattattgctttcttcaagt-ttgtcgcacgcacacctttcttcctcagagaaatctttacgttttgcaggtttatgcttcttcataaaactgcac |
43104493 |
T |
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| Q |
103 |
gtgttttgcatgttcattcttcttcagaaatcagaagtattgagagttcta------tccaattaatttttccagttcatcgatgttgtgtttgctcttc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43104492 |
gtgttttgcatgttcattcttcttcagaaatcagaagtattgagagttctacttctatccaattaatttttccagttcattgatgttgtgtttgctcttc |
43104393 |
T |
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| Q |
197 |
atcttctactccattcatttaaggaaaaactccatccaatcatgaaattaaattaatttaaataatggtatttcataaaaattgttgcct |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43104392 |
atcttctactccattcatttaaggaaaaactccatccaatcatgaaattaaattaatttaaataatggtatttcataaaaattgttgcct |
43104303 |
T |
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