View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_low_1 (Length: 484)
Name: NF10540_low_1
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 25865574 - 25865250
Alignment:
| Q |
17 |
gtattcagcgagtaataacgaactgataaaatgcatcgtgccaactggtagaccttgtcttcatcagagatcaaaatttcattggctggattggtgtttt |
116 |
Q |
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| T |
25865574 |
gtattcagcgagtaataacgaactgataaaatgcattgtgcctactggtagaccttgtcttcatccgagatcaaaatttcattggctcgattggtgtttt |
25865475 |
T |
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| Q |
117 |
cgtcatctacatgatgaagttgattattctctagttgaatagtctgctatctaggcacccatgcttacaacttgttattgtcttatgtttaaattttgtt |
216 |
Q |
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| T |
25865474 |
cgtcatctacatgatgaagttgattattctctagttgaatagtctgctaactaggcacc-atgcttacaacttgttaatgtctcatgtttaaattttgtt |
25865376 |
T |
|
| Q |
217 |
ccttctgtttcccttttattttcgtatactttgattagcctggaaaagcttgtcatggtttttataatttcattatccctgctaagattatgtgactctc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
25865375 |
ccttctgtttcccttttattttcgtatactttgattagcctggaaaagcttgtcatggtttctataatttcattatccctgctcagattatgtgactctt |
25865276 |
T |
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| Q |
317 |
gatgaatatgacttatgaactcggtc |
342 |
Q |
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| T |
25865275 |
gatgaatatgacttatgaactcggtc |
25865250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 25861517 - 25861479
Alignment:
| Q |
398 |
caatgtctcttttcatgttcactcgctaactttagattt |
436 |
Q |
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| T |
25861517 |
caatgtctcttttcatgttcactcgctaactttagattt |
25861479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 25850109 - 25850029
Alignment:
| Q |
256 |
ctggaaaagcttgtcatggtttttataatttcattatccctgctaagattatgtgactctcgatgaatatgacttatgaact |
337 |
Q |
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| T |
25850109 |
ctggaaaaacttttcatagtttctatagtttcattatctttgctcagattatgtga-tttagaagaatatgacttatgaact |
25850029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 470
Target Start/End: Complemental strand, 25861488 - 25861459
Alignment:
| Q |
441 |
ctttagattttactcttgttggtttgattt |
470 |
Q |
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| T |
25861488 |
ctttagattttactcttgttggtttgattt |
25861459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 32347420 - 32347368
Alignment:
| Q |
105 |
gattggtgttttcgtcatctacatgatgaagttgattattctctagttgaata |
157 |
Q |
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| T |
32347420 |
gattggtgttttagacatctacaatctgaagtagattattctctagttgaata |
32347368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 129 - 291
Target Start/End: Original strand, 17247989 - 17248150
Alignment:
| Q |
129 |
gatgaagttgattattctctagttgaatagtctgctatctaggcacccatgcttacaacttgttattgtcttatgtttaaattttgttccttctgtttcc |
228 |
Q |
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|||||||||||||||||| | ||| |||| || |||| | |||||| |||| | |||||| ||| | |||||| ||| || ||||||||| |||||| |
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| T |
17247989 |
gatgaagttgattattctttggttcaataatcggctaatttggcacc-atgcgtgcaactttttactctcttatatttggatattgttccttttgtttct |
17248087 |
T |
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| Q |
229 |
cttttattttcgtatactttgattagcctggaaaagcttgtcatggtttttataatttcatta |
291 |
Q |
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| T |
17248088 |
cttttaatttcttatactctgattagaccggaaaaacttgtcatggtttctataatttcatta |
17248150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 14964418 - 14964467
Alignment:
| Q |
105 |
gattggtgttttcgtcatctacatgatgaagttgattattctctagttga |
154 |
Q |
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| T |
14964418 |
gattggtgttttagacatctacaatatgaagtagattattctctagttga |
14964467 |
T |
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