View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_low_12 (Length: 271)
Name: NF10540_low_12
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_low_12 |
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| [»] scaffold0352 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: scaffold0352 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 43 - 243
Target Start/End: Original strand, 16629 - 16829
Alignment:
| Q |
43 |
agtcatgagaatgtatgtgcattggaatagtaaaaatatcacactgatttttagcatcggtgaacaattagagttccaatagagaaaattcaaatttgaa |
142 |
Q |
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| T |
16629 |
agtcatgagaatgtatgtgcattggaatagtaaaaatatcacactgatttttagcatcggtgaacaattagagttccaatggggaaaattcaaatttgaa |
16728 |
T |
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| Q |
143 |
ttgatggtagtgttctgtgtaagccagcattaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttg |
242 |
Q |
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| T |
16729 |
ttgatggttgtgatgtgtgtaagccagcattaagatatgatcaaatggctgatatgttaattgtgcctaatgatagagatctaatggtcatgattgtttg |
16828 |
T |
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| Q |
243 |
g |
243 |
Q |
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| T |
16829 |
g |
16829 |
T |
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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 32651082 - 32651280
Alignment:
| Q |
74 |
aaaaatatcacactgatttttagca--tcggtgaacaattagagttccaatagagaaaattcaaatttgaattgatggtagtgttctgtgtaagccagca |
171 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| ||| | |||| |||||| || |
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| T |
32651082 |
aaaaatatcacactgatttttagcggttcggtgaacaattagagttccaatgggaaaaattcaaatttgaattgatggttgtgatgtgtgcaagccatca |
32651181 |
T |
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| Q |
172 |
ttaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggtttt |
271 |
Q |
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| T |
32651182 |
ttaagatgtgatcaa-tgactgatatgataattgcgcctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatcttagaattagggtttt |
32651280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 12506584 - 12506525
Alignment:
| Q |
166 |
ccagcattaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaa |
226 |
Q |
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| T |
12506584 |
ccagcattaagatctgatcaa-tggctgatatgataattgcgcctaacgatagagatctaa |
12506525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 41810266 - 41810215
Alignment:
| Q |
220 |
gatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggtttt |
271 |
Q |
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| T |
41810266 |
gatctaacggtctggattgattggcgcttaaaaatcttaaaattagggtttt |
41810215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 17726174 - 17726076
Alignment:
| Q |
173 |
taagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggtttt |
271 |
Q |
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| T |
17726174 |
taagatatgatcaaatggctgatatgataattgcgtctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatcttagaattagggtttt |
17726076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 4290044 - 4289976
Alignment:
| Q |
56 |
tatgtgcattggaatagtaaaaatatcacactgatttttagc--atcggtgaacaattagagttccaat |
122 |
Q |
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| T |
4290044 |
tatgtgcattggaatagtaaaaatatcacactgatttttagcggatcggtgaaaaattagagtttcaat |
4289976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 13893 - 13952
Alignment:
| Q |
166 |
ccagcattaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaa |
226 |
Q |
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| T |
13893 |
ccagcattaagatctgatcaa-tggctgatatgataattgcgcctaacgatagagatctaa |
13952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 19766169 - 19766075
Alignment:
| Q |
158 |
tgtgtaagccagcattaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttggcgcctaaaaa |
253 |
Q |
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|||| |||||||||||||||| ||||||| |||||||||| ||| |||||||||| | ||||| || || | |||||||||||||||||||| |
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| T |
19766169 |
tgtgcaagccagcattaagatttgatcaag-ggctgatatgttaagcttgtctaatgacatagatccaacggcctggattgtttggcgcctaaaaa |
19766075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 52130884 - 52130833
Alignment:
| Q |
220 |
gatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggtttt |
271 |
Q |
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||||||| |||| ||||| ||||||||||||||||||| |||||||||||| |
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| T |
52130884 |
gatctaacggtctggattgattggcgcctaaaaatcttagaattagggtttt |
52130833 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 26044778 - 26044836
Alignment:
| Q |
189 |
ggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttggcgcc |
247 |
Q |
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|||| |||||| ||||| | |||| ||||||||||||| || ||||||||||||||||| |
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| T |
26044778 |
ggcttatatgaaaattgcgcctaaagatagagatctaacggccatgattgtttggcgcc |
26044836 |
T |
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