View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_low_14 (Length: 248)
Name: NF10540_low_14
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10599618 - 10599858
Alignment:
| Q |
1 |
aactacacctaacacacaaatccaaaaccaaacccgacctaataacccacgaatgcaactccttcccaagcgacaaaaactgaatctcagcacacacaga |
100 |
Q |
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| T |
10599618 |
aactacacccaacacacaaatccaaaaccaaacccgacctaataacccacgaatgcaactccttcccaagcgacaaaaactgaatctcagcacaaaccga |
10599717 |
T |
|
| Q |
101 |
tatcaacccagttaacgtaaacctatccggaacatacccactactcaccaacatctccaaaaacaaatcaatcgcatcatcattataaccatattgagct |
200 |
Q |
| |
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|||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10599718 |
tatcaacccagtcaacgtaaatctatccggcacatacccactactcaccaacatttccaaaaacaaatcaatcgcttcatcattataaccatattgagct |
10599817 |
T |
|
| Q |
201 |
aacctagtaatcatcaaagtccacgtaacaacattcttctc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
10599818 |
aacctagtaatcatcaaagtccacgtaacaacattcttctc |
10599858 |
T |
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