View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10540_low_16 (Length: 228)

Name: NF10540_low_16
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10540_low_16
NF10540_low_16
[»] chr5 (5 HSPs)
chr5 (7-228)||(29585513-29585734)
chr5 (100-228)||(34352225-34352352)
chr5 (100-228)||(34359933-34360060)
chr5 (101-228)||(41718388-41718514)
chr5 (101-228)||(41723114-41723240)
[»] chr4 (10 HSPs)
chr4 (7-228)||(48697345-48697576)
chr4 (7-228)||(48702034-48702265)
chr4 (102-228)||(24520238-24520363)
chr4 (103-228)||(42265883-42266007)
chr4 (103-228)||(42270602-42270726)
chr4 (7-79)||(30950572-30950644)
chr4 (7-79)||(30945866-30945938)
chr4 (144-200)||(30945719-30945775)
chr4 (144-200)||(30950425-30950481)
chr4 (150-200)||(10427315-10427365)
[»] chr2 (6 HSPs)
chr2 (7-228)||(5198868-5199099)
chr2 (144-200)||(830205-830261)
chr2 (144-200)||(825549-825605)
chr2 (152-228)||(15602905-15602981)
chr2 (150-200)||(30397141-30397191)
chr2 (152-213)||(4478040-4478101)
[»] chr6 (7 HSPs)
chr6 (100-228)||(26976344-26976471)
chr6 (102-228)||(1234680-1234805)
chr6 (103-228)||(27874203-27874327)
chr6 (7-79)||(27879099-27879171)
chr6 (144-200)||(27878952-27879008)
chr6 (150-200)||(18967912-18967962)
chr6 (45-79)||(30986430-30986464)
[»] chr3 (6 HSPs)
chr3 (100-228)||(5818726-5818853)
chr3 (102-228)||(5823488-5823613)
chr3 (8-189)||(2817502-2817694)
chr3 (144-200)||(54545902-54545958)
chr3 (150-200)||(4579126-4579176)
chr3 (150-200)||(24671251-24671301)
[»] chr8 (2 HSPs)
chr8 (102-228)||(9439585-9439710)
chr8 (102-228)||(9444305-9444430)
[»] chr7 (3 HSPs)
chr7 (144-189)||(30235038-30235083)
chr7 (150-200)||(16183863-16183913)
chr7 (40-79)||(30234920-30234959)
[»] scaffold0074 (1 HSPs)
scaffold0074 (150-200)||(27458-27508)
[»] chr1 (1 HSPs)
chr1 (150-200)||(46191266-46191316)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 29585734 - 29585513
Alignment:
Q  7 aaagttactatgcaaaattgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactatttgtaccattgttccacacatcatcc 106  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585734 aaagttactatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactatttgtaccattgttccacacatcatcc 29585635  T
Q  107 caaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttcttctact 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  29585634 caaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagt 29585535  T
Q  207 ttgtgttagttagtattctcct 228  Q
    |||| |||||||||||||||||    
T  29585534 ttgtattagttagtattctcct 29585513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 34352225 - 34352352
Alignment:
Q  100 atcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttc 199  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  34352225 atcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttc 34352323  T
Q  200 ttctactttgtgttagttagtattctcct 228  Q
    | ||| |||||||||||||||||||||||    
T  34352324 tcctagtttgtgttagttagtattctcct 34352352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 34359933 - 34360060
Alignment:
Q  100 atcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttc 199  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  34359933 atcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttc 34360031  T
Q  200 ttctactttgtgttagttagtattctcct 228  Q
    | ||| |||||||||||||||||||||||    
T  34360032 tcctagtttgtgttagttagtattctcct 34360060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 41718388 - 41718514
Alignment:
Q  101 tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  41718388 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 41718486  T
Q  201 tctactttgtgttagttagtattctcct 228  Q
     ||| |||||||||||||||||||||||    
T  41718487 cctagtttgtgttagttagtattctcct 41718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 41723114 - 41723240
Alignment:
Q  101 tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  41723114 tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttct 41723212  T
Q  201 tctactttgtgttagttagtattctcct 228  Q
     ||| |||||||||||||||||||||||    
T  41723213 cctagtttgtgttagttagtattctcct 41723240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 48697576 - 48697345
Alignment:
Q  7 aaagttactatgcaaaattgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactatt----------tgtacc----attgt 92  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |          ||| ||    ||| |    
T  48697576 aaagttactatgcaaagttgaaaattcacatgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcattat 48697477  T
Q  93 tccacacatcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtg 192  Q
    || ||   ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||    
T  48697476 tctac---tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtg 48697381  T
Q  193 aggtttcttctactttgtgttagttagtattctcct 228  Q
    |||||||| ||| |||||||||||||||||||||||    
T  48697380 aggtttctcctagtttgtgttagttagtattctcct 48697345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 48702265 - 48702034
Alignment:
Q  7 aaagttactatgcaaaattgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactatt----------tgtaccattgttcca 96  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |          ||| || |||  |||    
T  48702265 aaagttactatgcaaagttgaaaatccacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtccc-ttgcacca 48702167  T
Q  97 caca--tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgag 194  Q
      |   ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||    
T  48702166 ttctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgag 48702068  T
Q  195 gtttcttctactttgtgttagttagtattctcct 228  Q
    |||||| ||| |||||||||||||||||||||||    
T  48702067 gtttctcctagtttgtgttagttagtattctcct 48702034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 24520363 - 24520238
Alignment:
Q  102 catcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctt 201  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||     
T  24520363 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 24520265  T
Q  202 ctactttgtgttagttagtattctcct 228  Q
    ||| |||||||||||||||||||||||    
T  24520264 ctagtttgtgttagttagtattctcct 24520238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 42265883 - 42266007
Alignment:
Q  103 atcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttcttc 202  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||| |||||||||||||||||| |    
T  42265883 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 42265981  T
Q  203 tactttgtgttagttagtattctcct 228  Q
    || |||||||||||| ||||||||||    
T  42265982 tagtttgtgttagtttgtattctcct 42266007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 42270602 - 42270726
Alignment:
Q  103 atcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttcttc 202  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||| |||||||||||||||||| |    
T  42270602 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 42270700  T
Q  203 tactttgtgttagttagtattctcct 228  Q
    || |||||||||||| ||||||||||    
T  42270701 tagtttgtgttagtttgtattctcct 42270726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 30950644 - 30950572
Alignment:
Q  7 aaagttactatgcaaaattgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcacta 79  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950644 aaagttactatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcacta 30950572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 30945938 - 30945866
Alignment:
Q  7 aaagttactatgcaaaattgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcacta 79  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30945938 aaagttactatgcaaagttgaaaattcacatgctgccataaatgcaattggttggggcatggctctttcacta 30945866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 30945775 - 30945719
Alignment:
Q  144 tagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945775 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 30945719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 30950481 - 30950425
Alignment:
Q  144 tagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950481 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 30950425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 10427315 - 10427365
Alignment:
Q  150 agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  10427315 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttct 10427365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 5199099 - 5198868
Alignment:
Q  7 aaagttactatgcaaaattgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactatt----------tgtaccattgttcca 96  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |          ||| || |||  |||    
T  5199099 aaagttactatgcaaagttgaaaatccacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtccc-ttgcacca 5199001  T
Q  97 caca--tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgag 194  Q
      |   ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||    
T  5199000 ttctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgag 5198902  T
Q  195 gtttcttctactttgtgttagttagtattctcct 228  Q
    |||||| ||| |||||||||||||||||||||||    
T  5198901 gtttctcctagtttgtgttagttagtattctcct 5198868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 830205 - 830261
Alignment:
Q  144 tagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830205 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 830261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 825549 - 825605
Alignment:
Q  144 tagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  825549 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttct 825605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 15602905 - 15602981
Alignment:
Q  152 tgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttcttctactttgtgttagttagtattctcct 228  Q
    |||||||||||||||||| ||||||||||| || | || ||||||||||  || |  ||||||||||||||||||||    
T  15602905 tgagaggaaaaatatagaaagaaaaattagatttttctatgaggtttctcttagtaagtgttagttagtattctcct 15602981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 30397191 - 30397141
Alignment:
Q  150 agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||| ||||||||||| |||  |||||||||||||||| |||||    
T  30397191 agtgagaggaacaatatagagaggaaatatagtttctcctgtgagatttct 30397141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 4478040 - 4478101
Alignment:
Q  152 tgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttcttctactttgtgtt 213  Q
    |||||||||||  | ||||||||||||||||||||  |||||||||| ||||| || |||||    
T  4478040 tgagaggaaaagaaaagagagaaaaattagtttcttatgtgaggttttttctaattagtgtt 4478101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 26976471 - 26976344
Alignment:
Q  100 atcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttc 199  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  26976471 atcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttc 26976373  T
Q  200 ttctactttgtgttagttagtattctcct 228  Q
    | ||| |||||||||||||||||||||||    
T  26976372 tcctagtttgtgttagttagtattctcct 26976344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 1234680 - 1234805
Alignment:
Q  102 catcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctt 201  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||     
T  1234680 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 1234778  T
Q  202 ctactttgtgttagttagtattctcct 228  Q
    ||| |||||||||||||||||||||||    
T  1234779 ctagtttgtgttagttagtattctcct 1234805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 27874327 - 27874203
Alignment:
Q  103 atcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttcttc 202  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||| |||||||||||||||||| |    
T  27874327 atcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc 27874229  T
Q  203 tactttgtgttagttagtattctcct 228  Q
    || |||||||||||| ||||||||||    
T  27874228 tagtttgtgttagtttgtattctcct 27874203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 27879171 - 27879099
Alignment:
Q  7 aaagttactatgcaaaattgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcacta 79  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27879171 aaagttactatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcacta 27879099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 27879008 - 27878952
Alignment:
Q  144 tagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27879008 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 27878952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 18967912 - 18967962
Alignment:
Q  150 agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    |||||||||||||||||| |||| |||  ||||||||| ||||||||||||    
T  18967912 agtgagaggaaaaatataaagaggaaatatagtttctcttgtgaggtttct 18967962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 30986430 - 30986464
Alignment:
Q  45 taaatgcaattggttggggcatggctctttcacta 79  Q
    |||||| ||||||||||||||||||||||||||||    
T  30986430 taaatgtaattggttggggcatggctctttcacta 30986464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 5818853 - 5818726
Alignment:
Q  100 atcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttc 199  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  5818853 atcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttc 5818755  T
Q  200 ttctactttgtgttagttagtattctcct 228  Q
    | ||| |||||||||||||||||||||||    
T  5818754 tcctagtttgtgttagttagtattctcct 5818726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 5823613 - 5823488
Alignment:
Q  102 catcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctt 201  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||     
T  5823613 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 5823515  T
Q  202 ctactttgtgttagttagtattctcct 228  Q
    ||| |||||||||||||||||||||||    
T  5823514 ctagtttgtgttagttagtattctcct 5823488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 2817694 - 2817502
Alignment:
Q  8 aagttactatgcaaaattgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactatt----------tgtaccattgttcca- 96  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          ||| || |||  |||     
T  2817694 aagttactatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtatacatagcatgt-cccttgcaccat 2817596  T
Q  97 -cacatcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcct 189  Q
     |   ||||||||||||||||||||||||| |||||||||| ||||| ||| ||| |||||| |||||||||||||| |||| |||||||||||    
T  2817595 tctactcatcccaaatcagtaacaacacaagaacaagtaaaacttgtttagggtaatgagagaaaaaatatagagaggaaaaatagtttctcct 2817502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 54545902 - 54545958
Alignment:
Q  144 tagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54545902 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 54545958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 4579126 - 4579176
Alignment:
Q  150 agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  4579126 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttct 4579176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 24671301 - 24671251
Alignment:
Q  150 agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  24671301 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttct 24671251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 9439710 - 9439585
Alignment:
Q  102 catcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctt 201  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||     
T  9439710 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 9439612  T
Q  202 ctactttgtgttagttagtattctcct 228  Q
    ||| |||||||||||||||||||||||    
T  9439611 ctagtttgtgttagttagtattctcct 9439585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 9444430 - 9444305
Alignment:
Q  102 catcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctt 201  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||     
T  9444430 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 9444332  T
Q  202 ctactttgtgttagttagtattctcct 228  Q
    ||| |||||||||||||||||||||||    
T  9444331 ctagtttgtgttagttagtattctcct 9444305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 30235038 - 30235083
Alignment:
Q  144 tagagtagtgagaggaaaaatatagagagaaaaattagtttctcct 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30235038 tagagtagtgagaggaaaaatatagagagaaaaattagtttctcct 30235083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 16183913 - 16183863
Alignment:
Q  150 agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  16183913 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttct 16183863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 30234920 - 30234959
Alignment:
Q  40 tgccataaatgcaattggttggggcatggctctttcacta 79  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  30234920 tgccataaatgtaattggttggggcatggctctttcacta 30234959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 27508 - 27458
Alignment:
Q  150 agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  27508 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttct 27458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 46191266 - 46191316
Alignment:
Q  150 agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct 200  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  46191266 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttct 46191316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University