View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_low_3 (Length: 402)
Name: NF10540_low_3
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 4503411 - 4503627
Alignment:
| Q |
15 |
ggaccgggtctatattagataaccccttcaaactttatatgtattcgtgaattaaatagttataaagttactcacaaattgattgacctaaatttatctt |
114 |
Q |
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| T |
4503411 |
ggaccgggtctatattagataaccccttcaaactttatatgtattcgtgaattaaatagttataaagtaactcacatattgattgacctaaatttatctt |
4503510 |
T |
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| Q |
115 |
aggttttgtgagctaagtgaattcacacctacaactaagattgagatcaagatattaatgaacttcaattaaagaacaatcttttgagagaacccaggtt |
214 |
Q |
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| T |
4503511 |
aggttttatgagctaagtgaattcacacctacaactaagattgagatcaagatattaatgaaattcaattaaagaacaatcttttgagagaacccaagtt |
4503610 |
T |
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| Q |
215 |
gtatcattactggaata |
231 |
Q |
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| T |
4503611 |
gtatcattactggaata |
4503627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 235 - 341
Target Start/End: Original strand, 4503903 - 4504014
Alignment:
| Q |
235 |
acgtattggtcaaactttaatcgtacctccaaacaaatttcaaattttcatgtg-----nnnnnnncttgagaagagaagggttaataaccacaaatatg |
329 |
Q |
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| T |
4503903 |
acgtattggtcaaactttaatcgtacctccaaacaaatttcaaattttcatgtgttttttttttttcttgagaacagaagggttaataaccacaaatatt |
4504002 |
T |
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| Q |
330 |
aacctcacctac |
341 |
Q |
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| T |
4504003 |
aaactcacctac |
4504014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 4504033 - 4504069
Alignment:
| Q |
360 |
tgcaaatgttggagacaattcaactgctacctttgct |
396 |
Q |
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| T |
4504033 |
tgcaaatgttggagacaattcaactgctacctctgct |
4504069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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