View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_low_4 (Length: 351)
Name: NF10540_low_4
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 43077264 - 43077606
Alignment:
| Q |
1 |
agcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaactcctaatcctggag |
100 |
Q |
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| T |
43077264 |
agcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaactcctaatcctggag |
43077363 |
T |
|
| Q |
101 |
caaaaggacagacactaggaacttatggttctgcaacttttgcagtgaattcaccttatttcattgctaagaacatcacattcaaagtaagtaacaaaac |
200 |
Q |
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| T |
43077364 |
caaaaggacagacactaggaacttatggttcggcaacttttgcagtgaattcaccttatttcattgctaagaacatcacattcaaagtaagtaacaaaac |
43077463 |
T |
|
| Q |
201 |
aagcctcatttctatgtttgtgttgttacaagaaaattaagactg--------tgtgtgtatgtatacagaatactgctccaattcctaaaccaggagca |
292 |
Q |
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| T |
43077464 |
aagcctcatttctatgtttgtgttgttacaagaaaattaagactgtgagtgtatgtatgtatgtatacagaatactgctccaattcctaaaccaggagca |
43077563 |
T |
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| Q |
293 |
gttggaaaacaaggagtggcattgagaatttcagctgatactg |
335 |
Q |
| |
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| T |
43077564 |
gttggaaaacaaggagtggcattgagaatttcagctgatactg |
43077606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 33965856 - 33965670
Alignment:
| Q |
3 |
cattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaactcctaatcctggagca |
102 |
Q |
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| T |
33965856 |
cattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatggggtgacactgctgcaacacctggtcc------a |
33965763 |
T |
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| Q |
103 |
aaaggacagacactaggaacttatggttctgcaacttttgcagtgaattcaccttatttcattgctaagaacatcacattcaaagtaagtaac |
195 |
Q |
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| T |
33965762 |
agagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttcattgccaagaacatcacattcaaagtatgtaac |
33965670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 20311564 - 20311437
Alignment:
| Q |
32 |
tacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaactcctaatcctggagcaaaaggacagacactaggaactta----tg |
127 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||| || | |||| |||||||||| || || |
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| T |
20311564 |
tacaaggagcaggtgcagataaactaaa-gttcaatggggtgacacttctcaaactcctaatactagggcaa---------cactaggaacctacctatg |
20311475 |
T |
|
| Q |
128 |
gttctgcaacttttgcagtgaattcaccttatttcatt |
165 |
Q |
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| T |
20311474 |
gttctgcaacatttgcagtgaattcaccttgtttcatt |
20311437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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