View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_low_5 (Length: 348)
Name: NF10540_low_5
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 4427087 - 4427292
Alignment:
| Q |
15 |
gactagttgataaattgaaaccttatttcacactcaaccaactacgcgctaatattttcacagcttatgttaccgattcaaacaccaccgactttgttct |
114 |
Q |
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| T |
4427087 |
gactagttgattaattgaaaccttatttcacactcaaccaactacgcgctaatattttcacagcttatgttaccgattcaaacaccaccgactttgttct |
4427186 |
T |
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| Q |
115 |
taaagttccacttatttctttcctaattatccaaatacgatcaaattacaggactcttgccttctcttagattacccttcctactaagctgccaaattgc |
214 |
Q |
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| T |
4427187 |
taaagttccacttatttctttcctaattatccaaatacaatcaaattacaggactcttgccttctcctagattacccttcctactaagctgccaaattgc |
4427286 |
T |
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| Q |
215 |
tctaaa |
220 |
Q |
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|||||| |
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| T |
4427287 |
tctaaa |
4427292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 4427290 - 4427375
Alignment:
| Q |
248 |
aaagacacaccaatccatcttaaggtctcataccatacattcgaaaacaatggacattcaaagaatgaatattaaactgactcctg |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4427290 |
aaagacacaccaatccatcttaaggtctcataccatacattcgaaaacaatggacattcaaagaatgaatattaaactgactcctg |
4427375 |
T |
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