View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_low_6 (Length: 302)
Name: NF10540_low_6
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 26538098 - 26538383
Alignment:
| Q |
1 |
cggtctacaatgcctttagatgatgttgtcattgttaaggtaatttataaagcaagtctgcggcagtttgtttattatagatcatatttcggtctgaaag |
100 |
Q |
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| T |
26538098 |
cggtctacaatgcctttagatgatgttgtcattgttaaggtaatttataaagcaagtctgaggcagtttgtttattatagaccatatttcagtctgaaag |
26538197 |
T |
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| Q |
101 |
acttgaagctcattcattttgtcaattacacccaaacaccattttgttaatatatgatgaaaatgagtttgcattcaagcatgaaaagtcacaattaaat |
200 |
Q |
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| T |
26538198 |
acttgaagttcattcattttgtcaattacacccaaacaccattttgttaatatatgatgaatatgagtttgcattcaagcatggaaagtcacaattaaat |
26538297 |
T |
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| Q |
201 |
ggtaaggactctcaggaaataaatttttgtttgatgagaagtttgagaacctagtggactcaaacatacaaaacctgagatttagg |
286 |
Q |
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| T |
26538298 |
ggtaaggactctctggaaataaattgttctttgctcggaagtttgagaacctagtagactcaaacatacaaaacctgagatttagg |
26538383 |
T |
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Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 5974805 - 5975088
Alignment:
| Q |
3 |
gtctacaatgcctttagatgatgttgtcattgttaaggtaatttataaagcaagtctgcggcagtttgtttattata----gatcatatttcggtctgaa |
98 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | || |||||| |||||| || |||||||| |||||| |
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| T |
5974805 |
gtctacaatgcctttagatgatgatgccattgttaaggtaatttataaagcaagtctgagtcattttgtt-attatattgggaccatatttcaatctgaa |
5974903 |
T |
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| Q |
99 |
agacttgaagctcattcattttgtcaattacacccaaacaccattttgttaatatatgatgaaaatgagtttgcattcaagcatgaaaagtcacaattaa |
198 |
Q |
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| T |
5974904 |
atacttgaagctcattcattttgtcaatcacacccaaacaccattttgttaatatataatgaaaacgagtttgcattcaagcatg--aagtcacaattaa |
5975001 |
T |
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| Q |
199 |
atggtaaggactctcaggaaataaatttttgtttgatgagaagtttgagaacctagtggactcaaacatacaaaacctgagatttag |
285 |
Q |
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|||| ||||||| | |||||||||||| ||||||| |||||||||||||||||||| |||| ||||||||| ||||||| |||||| |
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| T |
5975002 |
atggcaaggactgttaggaaataaattgttgtttgctgagaagtttgagaacctagcagactgaaacatacagaacctgatatttag |
5975088 |
T |
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