View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10540_low_9 (Length: 289)
Name: NF10540_low_9
Description: NF10540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10540_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 37500981 - 37501240
Alignment:
| Q |
14 |
aggaagcttggaggtctaggagttcatccagctcgactacaaaacacaactttgttgggaaaacttgtttggagtttcgtgcaatcagacaagaagttat |
113 |
Q |
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| T |
37500981 |
aggaagcttggaggtctaggagttcatccaactcgactacaaaacacaactttgttgggaaaacttgtttggagtttcgtgcaatcagacaagaagttat |
37501080 |
T |
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| Q |
114 |
gggtgtctatccttgctgataaatacttgaaaaggggaatatgtttttagaaaaaccaaaaacaggttcacctatttggaatgcaatcctcaaaactctt |
213 |
Q |
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| T |
37501081 |
gggtgtctatccttgctgataaatacttgaaaaggggaatatgtttttagaaaaagcaaaaacaggttcacctatttggaatgcaatcctcaaaactctt |
37501180 |
T |
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| Q |
214 |
gatgtgttagaagatggtttctcctacaaaacggagatggagatacaaatatgtggatcc |
273 |
Q |
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| T |
37501181 |
tatgtgttagaagatggtttctcctacaaaacggagatggagatacaaatatgtggatcc |
37501240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 9194557 - 9194301
Alignment:
| Q |
14 |
aggaagcttggaggtctaggagttcatccagctcgactacaaaacacaactttgttgggaaaacttgtttggagtttcgtgcaatcagacaagaagttat |
113 |
Q |
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| T |
9194557 |
aggaagcttggaggtctaggatttcagccagcatgataacaaaacacaactttgttgggaaaacttgtttgttgtcttaagcaatcagacacaaaattat |
9194458 |
T |
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| Q |
114 |
gggtgtctatccttgctgataaatacttgaaa-aggggaatatgtttttagaaaaaccaaaaacaggttcacctatttggaatgcaatcctcaaaactct |
212 |
Q |
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| T |
9194457 |
gggtgtctatccttgccaataaatacttaaaagagggtaaaatgtttatatacaaatcaaggac-ggttcgccaatttggaatgcaatcctcaagtctct |
9194359 |
T |
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| Q |
213 |
tgatgtgttagaagatggtttctcctacaaaa-cggagatggagatacaaatatgtgg |
269 |
Q |
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| T |
9194358 |
tgatattttaaaagatggtttcgcctaaaaaattgttgatggagatacaaatatgtgg |
9194301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 269
Target Start/End: Original strand, 8989260 - 8989410
Alignment:
| Q |
121 |
tatccttgctgataaatacttgaaa-aggggaatatgtttttagaaaaaccaaaaacaggttcacctatttggaatgcaatcctcaaaactcttgatgtg |
219 |
Q |
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||||||||| ||||||||||||||| |||| ||||| |||| ||||||| |||| ||| ||| ||||||| || || ||||| ||||||||| ||||| | |
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| T |
8989260 |
tatccttgccgataaatacttgaaagagggtaatatattttcagaaaaagcaaagacatgtttacctattaggtattcaatcatcaaaactcgtgatgcg |
8989359 |
T |
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| Q |
220 |
ttagaagatggtttctcctacaaaa-cggagatggagatacaaatatgtgg |
269 |
Q |
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|| || ||||||| | ||||||||| ||||||| |||||||| ||||||| |
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| T |
8989360 |
tttgatgatggttccgcctacaaaattggagatgaagatacaattatgtgg |
8989410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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