View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_high_4 (Length: 260)
Name: NF10541_high_4
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 18468097 - 18467851
Alignment:
| Q |
1 |
tttctgtgtgcttctacgtgcctaatgtatctctccacgtgtagcacatgctgttctggaaaaa-tattgatttttgttgtattttctctgtaagcttga |
99 |
Q |
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| T |
18468097 |
tttctgagtgcttctacgtgcctaatgcatctctccacgtgtagcacatgctgttctggaaaaaatattgatttttgttgtattttctcagtaagtttga |
18467998 |
T |
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| Q |
100 |
ggaaaagtccatttctcaaccatacccctcagctagaaatatgacaataaatacaagagctttcattcaaaaaactgcattcagaacttggtggttcaag |
199 |
Q |
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| T |
18467997 |
ggaaaagtccatt-ctcaaccatacaccctagctagaaatatgacaataaatacaagagctttcattcaaaaaattgcattcagaacttggtggttcaag |
18467899 |
T |
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| Q |
200 |
aagaaggaaagccctaagagcatcaaaaagcgtctatctcctcaacct |
247 |
Q |
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| T |
18467898 |
aagaaggaaagcgctaagagcataaaaaagagtctatctcctcaacct |
18467851 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 24321969 - 24322040
Alignment:
| Q |
135 |
gaaatatgacaataaatacaagagctttcattcaaaaaactgcattcagaacttggtggttcaagaagaagg |
206 |
Q |
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| T |
24321969 |
gaaatatgtctataattacaagagctctcattcacaaatattcattcagaacttggcggttcaagaagaagg |
24322040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 4451167 - 4451102
Alignment:
| Q |
141 |
tgacaataaatacaagagctttcattcaaaaaactgcattcagaacttggtggttcaagaagaagg |
206 |
Q |
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| T |
4451167 |
tgactataaatacaagagttctcattcaaaaatatccacttagaacttggtggttcaagaggaagg |
4451102 |
T |
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