View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_high_8 (Length: 229)
Name: NF10541_high_8
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_high_8 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 1408061 - 1408283
Alignment:
| Q |
7 |
acatttacattcattcaagtcctaagtgagaatgtctataactcaaataaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactg |
106 |
Q |
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| T |
1408061 |
acatttacattcattcaagtcctaagtgagaatgtctataactcaaagaaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactg |
1408160 |
T |
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| Q |
107 |
gagcagcaaatgcaatatacacagctgttacgcctcctaatggtataagctactttggaagcaccacaggaagagcttctgatggccgtcttatcataga |
206 |
Q |
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| T |
1408161 |
gagcagcaaatgcaatatacacagctgttacgcctcctaatggtataagctactttggaagcaccacaggaagagcttctgatggccgtcttatcataga |
1408260 |
T |
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| Q |
207 |
ttttatcagtaagttaataactt |
229 |
Q |
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| T |
1408261 |
ttttatcagtaagttaataactt |
1408283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 1414367 - 1414532
Alignment:
| Q |
55 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
154 |
Q |
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| T |
1414367 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
1414466 |
T |
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| Q |
155 |
gctactttggaagcaccacaggaagagcttctgatggccgtcttatcatagattttatcagtaagt |
220 |
Q |
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| T |
1414467 |
gcttctttggaaacatatcaggaagagcttctgatggccgtctcataattgattctataagtaagt |
1414532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 1410991 - 1411156
Alignment:
| Q |
55 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
154 |
Q |
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| T |
1410991 |
aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaataa |
1411090 |
T |
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| Q |
155 |
gctactttggaagcaccacaggaagagcttctgatggccgtcttatcatagattttatcagtaagt |
220 |
Q |
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| T |
1411091 |
gcttctttggaaacatatcaggaagagcttctgatggccgtctcataattgattttataagtaagt |
1411156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 1419917 - 1419982
Alignment:
| Q |
56 |
aatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaa |
121 |
Q |
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| T |
1419917 |
aatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaa |
1419982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 3600501 - 3600673
Alignment:
| Q |
49 |
tcaaataaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatg |
148 |
Q |
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| T |
3600501 |
tcaaagaaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatg |
3600600 |
T |
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| Q |
149 |
gtataagctactttggaagcaccacaggaagagcttctgatggccgtcttatcatagattttatcagtaagtt |
221 |
Q |
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| T |
3600601 |
gtataagcttctttggaagcatctcaggaagatgttgtgatggtcgtctaattttagattttatcagtaagtt |
3600673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 14339368 - 14339540
Alignment:
| Q |
49 |
tcaaataaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatg |
148 |
Q |
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| T |
14339368 |
tcaaagaaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatg |
14339467 |
T |
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| Q |
149 |
gtataagctactttggaagcaccacaggaagagcttctgatggccgtcttatcatagattttatcagtaagtt |
221 |
Q |
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| T |
14339468 |
gtataagcttctttggaagcatctcaggaagatgttgcgatggtcgtctaattttagattttatcagtaagtt |
14339540 |
T |
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