View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10541_low_10 (Length: 351)
Name: NF10541_low_10
Description: NF10541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10541_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 49534992 - 49534657
Alignment:
| Q |
1 |
agcaattgtactttctgctactatacc-aacaaggtcttgccatgtgtctaacaggcatgtggttgccttagaatgcacgcatcaaatttatgtaacacg |
99 |
Q |
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| T |
49534992 |
agcaattgtactttctgctactatacccaacaaggtcttgccatgtgtctaacaggcatgtggttgccttagaatgcacgcatcaaatttatgtaacacg |
49534893 |
T |
|
| Q |
100 |
tgtcaacgtgccaatggcatatacaaatttaggactaacctatgtcaaccaatacatgaattaagcagtaatgtagtcaatcaatatgtgtagtagaagt |
199 |
Q |
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| T |
49534892 |
tgtcaacgtgccaatggcatatacaaatttaggactaacctatgtcaaccaatacatgaattaagcagtaatgtagtcaatcaatatgtgtagtagaagt |
49534793 |
T |
|
| Q |
200 |
agaggatggaaagaataccacattttattcctatcattgtgttctacaactttgatttgatcaaggtatgatatagatggcctaattacagctccacaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49534792 |
agaggatggaaagaataccacattttattcctatcattgtgttctacaactttgatttgatcaaggtatgatatagatggcctaattacagctccacaca |
49534693 |
T |
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| Q |
300 |
atatttccaaaaattcaagacatttgaatttttatt |
335 |
Q |
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| T |
49534692 |
atatttccaaaaattcaagacatttgaatttttatt |
49534657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 49108219 - 49108144
Alignment:
| Q |
147 |
accaatacatgaattaagcagtaatgtagtcaatcaatatgtgtagtagaagtagaggatggaaagaataccacattttatt |
228 |
Q |
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| T |
49108219 |
accaatacatgaaataagcattaatccagtcaatcaatctgtgtag------tagaggatggaaagaatatcacattttatt |
49108144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 49108008 - 49107964
Alignment:
| Q |
291 |
ctccacacaatatttccaaaaattcaagacatttgaatttttatt |
335 |
Q |
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| T |
49108008 |
ctccacacaatatttccacaaatataagacatttgaatttgtatt |
49107964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 38176505 - 38176327
Alignment:
| Q |
1 |
agcaattgtactttctgctactataccaacaaggtcttgccatgtgtctaacaggcatgtggttgccttagaatgcacgcatcaaatttatgtaacacgt |
100 |
Q |
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|||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | | | |
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| T |
38176505 |
agcaattgtactttttgccactataccaacaagatcttgccatgtgtctagcaggcatgtggttgccttagaatgcacgaa----------------ctt |
38176422 |
T |
|
| Q |
101 |
gtcaacgtgccaatggcatatacaaatttaggactaacctatgtcaaccaatacatgaattaagcagtaatgtagtcaatcaatatgtgtagtag |
195 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
38176421 |
gtcaacgtgccgatgacatatacaaatttaggactaacctatgtcaaccaatacatgaattaagcagtaatgtagtcgatcaatatgtttagtag |
38176327 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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